OTU count table from 16S V3-V5 targeted sequencing of the stool microbiome samples from the HMP project. A total of 2,094 OTUs from 295 samples.
The format is: chr "stool.otu.tab"
The OTU table was taken from R bioconductor "HMP16SData" package. OTUs with prevalence less than 10% and maximum proportion less than 0.2% were removed. This OTU table can be used for simulating stool microbiome sequencing data.
Schiffer L, Azhar R, Shepherd L, Ramos M, Geistlinger L, Huttenhower C, Dowd JB, Segata N, Waldron L (2019). “HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor.” American Journal of Epidemiology. doi: 10.1093/aje/kwz006.
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