HWE.show: show HWE tables

In GenABEL: genome-wide SNP association analysis

Description

This function displays HWE tables and shows Chi2 and exact HWE P-values

Usage

HWE.show(data, idsubset = c(1:data@gtdata@nids), 
	snpsubset = c(1:data@gtdata@nsnps))

Arguments

data	object of class gwaa.data-class or snp.data-class
snpsubset	Index, character or logical vector with subset of SNPs to run analysis on. If missing, all SNPs from data are used for analysis.
idsubset	Index, character or logical vector with subset of IDs to run analysis on. If missing, all people from data/cc are used for analysis.

Value

Only screen output

Author(s)

Yurii Aulchenko

See Also

check.marker

Examples

require(GenABEL.data)
data(srdta)
mc <- check.marker(srdta,p.lev=0.01,ibs.mrk=0)
mc$nohwe
HWE.show(data=srdta,snps=mc$nohwe)

GenABEL documentation built on May 30, 2017, 3:36 a.m.