GeneReg: Construct time delay gene regulatory network
Version 1.1.2

GeneReg is an R package for inferring time delay gene regulatory network using time course gene expression profiles. The main idea of time delay linear model is to fit a linear regression model using a set of putative regulators to estimate the transcription pattern of a specific target gene.

Browse man pages Browse package API and functions Browse package files

AuthorTao Huang
Date of publication2012-10-29 08:57:07
MaintainerTao Huang <huangtao@sibs.ac.cn>
LicenseLGPL
Version1.1.2
URL http://www.biomedcentral.com/1756-0500/3/142
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GeneReg")

Man pages

GeneReg-package: Construct time delay gene regulatory network
mut.expr.data: Time course cell cycle dataset of cyclin-mutant cells
plot: Plot gene regulatory network
plot.GeneReg: Plot gene regulatory network
tf.list: The candidate pool of potential regulators
timedelay.lm: time delay linear model
timedelay.lm.batch: time delay linear model batch
timedelay.univariate.lm: Internal function for time delay linear model
ts.bspline: B spline interpolation
wt.expr.data: Time course cell cycle dataset of wild-type cells

Functions

GeneReg Man page
mut.expr.data Man page
plot Man page Source code
plot.GeneReg Man page Source code
tf.list Man page
timedelay.lm Man page Source code
timedelay.lm.batch Man page Source code
timedelay.univariate.lm Man page Source code
ts.bspline Man page Source code
wt.expr.data Man page

Files

data
data/wt.expr.data.rda
data/mut.expr.data.rda
data/tf.list.rda
NAMESPACE
man
man/plot.GeneReg.Rd
man/timedelay.lm.batch.Rd
man/mut.expr.data.Rd
man/tf.list.Rd
man/GeneReg-package.Rd
man/wt.expr.data.Rd
man/timedelay.lm.Rd
man/plot.Rd
man/ts.bspline.Rd
man/timedelay.univariate.lm.Rd
DESCRIPTION
MD5
R
R/plot.GeneReg.R
R/timedelay.lm.R
R/timedelay.lm.batch.R
R/ts.bspline.R
R/timedelay.univariate.lm.R
R/plot.R
GeneReg documentation built on May 20, 2017, 3:47 a.m.