timedelay.univariate.lm: Internal function for time delay linear model

In GeneReg: Construct time delay gene regulatory network

Description

timedelay.univariate.lm is an internal function for time delay linear model.

Usage

timedelay.univariate.lm(bspline.data, target, regulator,
maxdelay=ncol(bspline.data)*0.25,
single.adj.r.squared=0.8, min.coef=0.25, max.coef=4)

Arguments

bspline.data	an interpolated expression matrix with genes in the rows, predicted time points in the columns
target	target gene
regulator	potential regulators
maxdelay	max time points delay
single.adj.r.squared	the cutoff of adjusted R squared of univariate regression
min.coef	the regression coefficient should be larger than min.coef
max.coef	the regression coefficient should be smaller than max.coef

References

Tao Huang, Lei Liu, Ziliang Qian, Kang Tu, Yixue Li, Lu Xie: Using GeneReg to construct time delay gene regulatory networks. BMC Res Notes 2010, 3(1):142. http://www.biomedcentral.com/1756-0500/3/142

GeneReg documentation built on May 30, 2017, 6:07 a.m.