timedelay.lm: time delay linear model

In GeneReg: Construct time delay gene regulatory network

Description

timedelay.lm is for time delay linear model.

Usage

timedelay.lm(bspline.data, expr.data, target, regulator,   
maxdelay=ncol(bspline.data)*0.25, single.adj.r.squared=0.8,
multiple.adj.r.squared=0.9, min.coef=0.25, max.coef=4,
output=FALSE, topdf=FALSE, xlab='time point', ylab='log ratio')

Arguments

bspline.data	an interpolated expression matrix with genes in the rows, predicted time points in the columns
expr.data	an observed expression matrix with genes in the rows, predicted time points in the columns
target	target gene
regulator	potential regulators
maxdelay	max time points delay
single.adj.r.squared	the cutoff of adjusted R squared of univariate regression
multiple.adj.r.squared	the cutoff of adjusted R squared of multivariate regression
min.coef	the regression coefficient should be larger than min.coef
max.coef	the regression coefficient should be smaller than max.coef
output	whether the model should be plotted
topdf	whether the model should be plotted into a pdf file
xlab	xlab of the plot
ylab	ylab of the plot

References

Tao Huang, Lei Liu, Ziliang Qian, Kang Tu, Yixue Li, Lu Xie: Using GeneReg to construct time delay gene regulatory networks. BMC Res Notes 2010, 3(1):142. http://www.biomedcentral.com/1756-0500/3/142

GeneReg documentation built on May 30, 2017, 6:07 a.m.