pypopHeaders: Convert BIGDAWG File Headers to PyPop Format
In HLAtools: Toolkit for HLA Immunogenomics
pypopHeaders R Documentation
Convert BIGDAWG File Headers to PyPop Format
Description
Convert the header of a BIGDAWG-formatted data frame into a Python for Population Genomics (PyPop) formatted header.
Usage
pypopHeaders(colHead)
Arguments
colHead
A vector of column names. BIGDAWG format requires that the first two header values are the sample identifier character string and the subject status (0 or 1). All other header values should be paired locus/gene names.
Value
A PyPop-formatted column header vector.
Note
This function returns unique locus names for each column. For example, "A_1" and "A_2" headers will be returned for two "A" locus columns. PyPop configuration (.ini) files allow this format to be customized.
References
Lancaster et al. Front Immunol. 2024 Apr 2;15:1378512. https://pubmed.ncbi.nlm.nih.gov/38629078/
Pappas et al. Hum Immunol. 2016 Mar 77(3):283-287. https://pubmed.ncbi.nlm.nih.gov/26708359/
See Also
Examples
pyHead <- pypopHeaders(colnames(sHLAdata))
HLAtools documentation built on June 8, 2025, 12:24 p.m.
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| pypopHeaders | R Documentation |
Convert BIGDAWG File Headers to PyPop Format
Description
Convert the header of a BIGDAWG-formatted data frame into a Python for Population Genomics (PyPop) formatted header.
Usage
pypopHeaders(colHead)
Arguments
colHead |
A vector of column names. BIGDAWG format requires that the first two header values are the sample identifier character string and the subject status (0 or 1). All other header values should be paired locus/gene names. |
Value
A PyPop-formatted column header vector.
Note
This function returns unique locus names for each column. For example, "A_1" and "A_2" headers will be returned for two "A" locus columns. PyPop configuration (.ini) files allow this format to be customized.
References
Lancaster et al. Front Immunol. 2024 Apr 2;15:1378512. https://pubmed.ncbi.nlm.nih.gov/38629078/
Pappas et al. Hum Immunol. 2016 Mar 77(3):283-287. https://pubmed.ncbi.nlm.nih.gov/26708359/
See Also
Examples
pyHead <- pypopHeaders(colnames(sHLAdata))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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