typeToSource: Convert AlignType Values to Source Values

In HLAtools: Toolkit for HLA Immunogenomics

Convert AlignType Values to Source Values

Description

Converts between 'alignType' values, identifying four types of sequence alignments and 'source' values, identifying three kinds of alignment files.

Usage

typeToSource(alignVector, toSource = TRUE)

Arguments

alignVector	A vector of character values specifying kinds of four sequence alignment types ("prot","nuc","codon" and "gen"), or three source alignment files ("AA","cDNA", and "gDNA").
toSource	A logical. If 'toSource' is true, 'alignType' values are converted to 'source' values. If 'toSource' is false, 'source' values are concerted to 'alignType' values

Value

A character string of the converted 'align' or 'source' value.

Examples

typeToSource(c("nuc","prot","gen"),TRUE) 

HLAtools documentation built on June 8, 2025, 12:24 p.m.