HMPTrees: Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data

Tools to model, compare, and visualize populations of taxonomic tree objects.

AuthorPatricio S. La Rosa, Elena Deych, Berkley Shands, William D. Shannon
Date of publication2016-01-19 23:53:07
MaintainerBerkley Shands <rpackages@biorankings.com>
LicenseApache License (== 2.0)
Version1.3

View on CRAN

Files in this package

HMPTrees
HMPTrees/inst
HMPTrees/inst/doc
HMPTrees/inst/doc/Creating-Data-From-RDP-Tutorial.Rnw
HMPTrees/inst/doc/Creating-Data-From-RDP-Tutorial.pdf
HMPTrees/NAMESPACE
HMPTrees/NEWS
HMPTrees/data
HMPTrees/data/saliva.rda
HMPTrees/data/throat.rda
HMPTrees/data/stool.rda
HMPTrees/R
HMPTrees/R/getBranchSizes.R HMPTrees/R/traverseTreeHelp.R HMPTrees/R/createTrees.R HMPTrees/R/transformHMPtoHMPTree.R HMPTrees/R/pairedCompareTwoDataSets.R HMPTrees/R/getTaxaDepth.R HMPTrees/R/plotTree.R HMPTrees/R/trimToTaxaLevel.R HMPTrees/R/subsetData.R HMPTrees/R/traverseTree.R HMPTrees/R/createAndPlot.R HMPTrees/R/buildTree.R HMPTrees/R/transformHMPTreetoHMP.R HMPTrees/R/generateTree.R HMPTrees/R/displayLegend.R HMPTrees/R/plotTreeDataMDS.R HMPTrees/R/mergeDataSets.R HMPTrees/R/removeUnclass.R HMPTrees/R/formatData.R HMPTrees/R/getMLEandLoglike.R HMPTrees/R/checkTreeValidity.R HMPTrees/R/compareTwoDataSets.R HMPTrees/R/checkTreeValidHelp.R
HMPTrees/vignettes
HMPTrees/vignettes/Creating-Data-From-RDP-Tutorial.Rnw
HMPTrees/MD5
HMPTrees/build
HMPTrees/build/vignette.rds
HMPTrees/DESCRIPTION
HMPTrees/man
HMPTrees/man/HMPTrees-internal.Rd HMPTrees/man/displayLegend.Rd HMPTrees/man/transformHMPtoHMPTree.Rd HMPTrees/man/transformHMPTreetoHMP.Rd HMPTrees/man/trimToTaxaLevel.Rd HMPTrees/man/pairedCompareTwoDataSets.Rd HMPTrees/man/generateTree.Rd HMPTrees/man/plotTree.Rd HMPTrees/man/checkTreeValidity.Rd HMPTrees/man/createAndPlot.Rd HMPTrees/man/throat.Rd HMPTrees/man/stool.Rd HMPTrees/man/formatData.Rd HMPTrees/man/compareTwoDataSets.Rd HMPTrees/man/mergeDataSets.Rd HMPTrees/man/HMPTrees-package.Rd HMPTrees/man/getMLEandLoglike.Rd HMPTrees/man/saliva.Rd HMPTrees/man/plotTreeDataMDS.Rd HMPTrees/man/createTrees.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.