checkTreeValidity | Check Validity of an RDP-Based Taxonomic Tree |
compareTwoDataSets | Likelihood-Ratio-Test Statistics to Compare the Distribution... |
createAndPlot | Create and Plot a Tree from a Data Set |
createTrees | Create a Tree Object |
displayLegend | Displays Tree Plot Legend |
formatData | Formats a Data Set |
generateTree | Generate Test Trees |
getMLEandLoglike | Get MLE and Log Likelihood of a Data Set |
HMPTrees-internal | Internal Functions |
HMPTrees-package | Object Oriented Data Analysis of Taxonomic Trees |
mergeDataSets | Merge Multiple Data Sets |
pairedCompareTwoDataSets | Likelihood-Ratio-Test Statistics to Compare the Distribution... |
plotTree | Plots a Tree Object |
plotTreeDataMDS | Plot an MDS Plot of a Group of Trees |
saliva | Saliva Data Set |
stool | Stool Data Set |
throat | Throat Data Set |
trimToTaxaLevel | Trim a Tree to a Given Level |
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