Description Usage Arguments Details Value Author(s) Examples
This function creates a list tree objects of type 'phylo' for use in plotting the trees.
1 | createTrees(data, samples = NULL, level = "genus", split = ".")
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data |
A data frame in which each column contains the rdp read counts for every taxa given in the row names. |
samples |
Deprecated. Only send the columns in data to create. |
level |
The depth the tree creation will go down to (kingdom, phylum, class, order, family, genus, species, subspecies). |
split |
This is the character that separates the taxa levels in the row names. |
For 'level' k, p, c, o, f, g, s and ss can be used in place of kingdom, phylum, class, order, family, genus, species and subspecies respectively.
A list of 'phylo' objects that can be passed to plotTree to plot them.
Berkley Shands, Patricio S. La Rosa, Elena Deych, William D. Shannon
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