Estimation and testing of HWE using Bayesian methods. Three models are currently considered: HWE, a model parameterized in terms of the allele frequencies and a single inbreeding coefficient f, and the saturated model. Testing is based on Bayes factors.

Author | Jon Wakefield [aut, cre], Martyn Plummer [ctb] |

Date of publication | 2013-12-18 12:03:46 |

Maintainer | Jon Wakefield <jonno@u.washington.edu> |

License | GPL-2 |

Version | 1.4 |

**baselogit:** Calculates a set of baseline logits from a set of...

**DiabRecess:** Data on diabetes patients antigen classes

**DirichNormHWE:** Evaluates the normalizing constant under the HWE model, with...

**DirichNormSat:** Evaluates the normalizing constant (as used in the...

**DirichSampHWE:** Simulate samples from a Dirichlet prior or posterior under...

**DirichSampSat:** Simulate samples from a Dirichlet prior or posterior under...

**HWEDirichBF2:** Evaluates the Bayes factor in the k=2 allele case under...

**HWEImportSamp:** Importance sampling to calculate the normalizing constant...

**HWEmodelsMLE:** Evaluates the maximum likelihood estimates of the parameters...

**HWEsimdat:** Simulate data under the single f model with k alleles.

**HWETriangBF2:** Evaluates the Bayes factor in the k=2 allele case with a...

**invbaselogit:** Converts a set of k-1 baseline logits into a set of...

**LambdaOptim:** Obtains values for the prior specification for lambda

**MultLogLik:** Evaluates the Multinomial likelihood under the single f model

**MultLogLikP:** Evaluates the Multinomial likelihood under the single f model

**SinglefPrior:** Samples from the single f prior.

**SinglefReject:** Samples from the posterior for the single f model

**TriangNormHWE:** Evaluates the normalizing constant under the HWE model, for...

HWEBayes

HWEBayes/inst

HWEBayes/inst/CITATION

HWEBayes/inst/doc

HWEBayes/inst/doc/HWEBayes-Guide.R

HWEBayes/inst/doc/HWEBayes-Guide.pdf

HWEBayes/inst/doc/HWEBayes-Guide.Snw

HWEBayes/NAMESPACE

HWEBayes/data

HWEBayes/data/DiabRecess.rda

HWEBayes/R

HWEBayes/R/HWEImportSamp.R
HWEBayes/R/LambdaOptim.R
HWEBayes/R/HWEmodelsMLE.R
HWEBayes/R/SinglefPrior.R
HWEBayes/R/DirichSampHWE.R
HWEBayes/R/HWEsimdat.R
HWEBayes/R/DirichNormSat.R
HWEBayes/R/SinglefReject.R
HWEBayes/R/TriangNormHWE.R
HWEBayes/R/HWEDirichBF2.R
HWEBayes/R/HWETriangBF2.R
HWEBayes/R/DirichSampSat.R
HWEBayes/R/baselogit.R
HWEBayes/R/DirichNormHWE.R
HWEBayes/R/MultLogLik.R
HWEBayes/R/invbaselogit.R
HWEBayes/vignettes

HWEBayes/vignettes/HWEBayes-Guide.Snw

HWEBayes/MD5

HWEBayes/build

HWEBayes/build/vignette.rds

HWEBayes/DESCRIPTION

HWEBayes/man

HWEBayes/man/LambdaOptim.Rd
HWEBayes/man/DirichNormHWE.Rd
HWEBayes/man/DirichSampHWE.Rd
HWEBayes/man/MultLogLikP.Rd
HWEBayes/man/SinglefReject.Rd
HWEBayes/man/SinglefPrior.Rd
HWEBayes/man/baselogit.Rd
HWEBayes/man/invbaselogit.Rd
HWEBayes/man/TriangNormHWE.Rd
HWEBayes/man/HWEmodelsMLE.Rd
HWEBayes/man/HWEDirichBF2.Rd
HWEBayes/man/DirichSampSat.Rd
HWEBayes/man/HWETriangBF2.Rd
HWEBayes/man/HWEImportSamp.Rd
HWEBayes/man/DirichNormSat.Rd
HWEBayes/man/HWEsimdat.Rd
HWEBayes/man/DiabRecess.Rd
HWEBayes/man/MultLogLik.Rd
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