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README.md
In HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Hydrogen/Deuterium eXchange Mass Spectrometry (HDX-MS) is a staple technology in structural proteomics. HaDeX provides a analytic workflow for HDX-MS data available as a standalone GUI (https://sourceforge.net/projects/HaDeX/), web server (https://hadex.mslab-ibb.pl/) and the R package available on CRAN (https://cran.r-project.org/web/packages/HaDeX/index.html).
Local instance of HaDeX GUI
To run HaDeX GUI locally on Windows, install it using the following binary file: https://sourceforge.net/projects/HaDeX/files/HaDeX_setup.exe/download
Local instance of HaDeX package
You can install the latest development version of the package:
devtools::install_github("hadexversum/HaDeX")
or the latest version available on CRAN:
install.packages("HaDeX")
After installation GUI can be accessed locally:
library(HaDeX)
HaDeX_gui()
Online manual
The HaDeX documentation is available online.
Citation
Puchala W, Burdukiewicz M, Kistowski M, Dabrowska KA, Badaczewska-Dawid AE, Cysewski D and Dadlez M (2020). HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data. Bioinformatics, 10.1093/bioinformatics/btaa587.
Funding
This work is supported by Foundation of Polish Science (TEAM TECH CORE FACILITY/2016-2/2 Mass Spectrometry of Biopharmaceuticals - improved methodologies for qualitative, quantitative and structural characterization of drugs, proteinaceous drug targets and diagnostic molecules).
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HaDeX documentation built on Aug. 12, 2021, 5:20 p.m.
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HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Hydrogen/Deuterium eXchange Mass Spectrometry (HDX-MS) is a staple technology in structural proteomics. HaDeX provides a analytic workflow for HDX-MS data available as a standalone GUI (https://sourceforge.net/projects/HaDeX/), web server (https://hadex.mslab-ibb.pl/) and the R package available on CRAN (https://cran.r-project.org/web/packages/HaDeX/index.html).
Local instance of HaDeX GUI
To run HaDeX GUI locally on Windows, install it using the following binary file: https://sourceforge.net/projects/HaDeX/files/HaDeX_setup.exe/download
Local instance of HaDeX package
You can install the latest development version of the package:
devtools::install_github("hadexversum/HaDeX")
or the latest version available on CRAN:
install.packages("HaDeX")
After installation GUI can be accessed locally:
library(HaDeX)
HaDeX_gui()
Online manual
The HaDeX documentation is available online.
Citation
Puchala W, Burdukiewicz M, Kistowski M, Dabrowska KA, Badaczewska-Dawid AE, Cysewski D and Dadlez M (2020). HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data. Bioinformatics, 10.1093/bioinformatics/btaa587.
Funding
This work is supported by Foundation of Polish Science (TEAM TECH CORE FACILITY/2016-2/2 Mass Spectrometry of Biopharmaceuticals - improved methodologies for qualitative, quantitative and structural characterization of drugs, proteinaceous drug targets and diagnostic molecules).
Try the HaDeX package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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