reconstruct_sequence: Reconstruct protein sequence
In HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/reconstruct_sequence.R
Description
Reconstructs protein sequence from supplied file.
Usage
1
reconstruct_sequence(dat, protein = dat[["Protein"]][1])
Arguments
dat
data read by read_hdx
protein
the protein of which the structure is to be reconstructed
Details
The function reconstructs protein sequence from supplied experimental data. If a position is not covered, x is shown.
First version doesn't support manual sequence length correction.
Value
reconstructed sequence - character object.
See Also
Examples
1
2
dat <- read_hdx(system.file(package = "HaDeX", "HaDeX/data/KD_180110_CD160_HVEM.csv"))
reconstruct_sequence(dat)
HaDeX documentation built on Aug. 12, 2021, 5:20 p.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/reconstruct_sequence.R
Description
Reconstructs protein sequence from supplied file.
Usage
1 | reconstruct_sequence(dat, protein = dat[["Protein"]][1])
|
Arguments
dat |
data read by |
protein |
the protein of which the structure is to be reconstructed |
Details
The function reconstructs protein sequence from supplied experimental data. If a position is not covered, x is shown. First version doesn't support manual sequence length correction.
Value
reconstructed sequence - character object.
See Also
Examples
1 2 | dat <- read_hdx(system.file(package = "HaDeX", "HaDeX/data/KD_180110_CD160_HVEM.csv"))
reconstruct_sequence(dat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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