Files in HaDeX

Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

MD5

README.md

NAMESPACE

DESCRIPTION

CHANGELOG

R/prepare_dataset.R R/read_hdx.R R/reconstruct_sequence.R R/calculate_kinetics.R R/HaDeX-package.R R/calculate_confidence_limit_values.R R/calculate_state_deuteration.R R/plot_position_frequency.R R/HaDeX_gui.R R/woods_plot.R R/plot_coverage.R R/plot_kinetics.R R/quality_control.R R/comparison_plot.R R/add_stat_dependency.R

inst/WORDLIST

inst/doc/transformation.Rmd inst/doc/datafiles.R inst/doc/mass_comparison.R inst/doc/transformation.R inst/doc/datafiles.Rmd

inst/doc/HaDeX.html

inst/doc/HaDeX.Rmd

inst/doc/mass_comparison.html

inst/doc/transformation.html

inst/doc/datafiles.html

inst/doc/mass_comparison.Rmd inst/doc/HaDeX.R

inst/HaDeX/ga.js

inst/HaDeX/ui.R

inst/HaDeX/HaDeX.png

inst/HaDeX/data-work.R inst/HaDeX/server.R inst/HaDeX/report_template.Rmd

inst/HaDeX/www/resize-logo-panel.js

inst/HaDeX/www/HaDeX_theme.css

inst/HaDeX/www/collapsing.js

inst/HaDeX/www/mobile_version.css

inst/HaDeX/www/detect-element-resize.js

inst/HaDeX/www/funding_icons.png

inst/HaDeX/www/mock_logo.png

inst/HaDeX/www/fonts/Montserrat-Light.ttf

inst/HaDeX/www/fonts/RobotoMono-Regular.ttf

inst/HaDeX/www/fonts/Montserrat-SemiBold.ttf

inst/HaDeX/readmes/summary.md inst/HaDeX/readmes/about.md

inst/HaDeX/data/amino_prop.csv

inst/HaDeX/data/KD_180110_CD160_HVEM.csv

inst/HaDeX/data/two_proteins.csv

inst/HaDeX/data/KD_190304_Nucb2_EDTA_CaCl2_test02_clusterdata.csv

inst/HaDeX/plots/differentialPlot.R inst/HaDeX/docs/comparisonPlot.md inst/HaDeX/docs/qc_calc_type.md inst/HaDeX/docs/confidence_limit_2.md inst/HaDeX/docs/kin_plot_data.md inst/HaDeX/docs/kin_out_time.md inst/HaDeX/docs/chosen_protein.md inst/HaDeX/docs/out_time.md inst/HaDeX/docs/calc_type.md inst/HaDeX/docs/differentialPlot.md inst/HaDeX/docs/in_time.md inst/HaDeX/docs/kin_calc_type.md inst/HaDeX/docs/adjust_colors.md inst/HaDeX/docs/chosen_time.md inst/HaDeX/docs/kin_theory.md inst/HaDeX/docs/state_first.md inst/HaDeX/docs/qc_chosen_time.md inst/HaDeX/docs/theory.md inst/HaDeX/docs/sequence_start_shift.md inst/HaDeX/docs/sequence_length.md inst/HaDeX/docs/qc_in_time.md inst/HaDeX/docs/peptide_list_data.md inst/HaDeX/docs/kin_in_time.md inst/HaDeX/docs/kinetic_plot_chosen_peptides.md inst/HaDeX/docs/state_second.md inst/HaDeX/docs/qc_state_second.md inst/HaDeX/docs/confidence_limit.md inst/HaDeX/docs/qc_state_first.md inst/HaDeX/docs/deut_concentration.md inst/HaDeX/docs/woods_plot_title.md inst/HaDeX/docs/quality_control_plot.md inst/HaDeX/docs/chosen_control.md inst/HaDeX/docs/compare_states.md

build/vignette.rds

tests/testthat.R tests/spelling.R tests/testthat/test_reconstruct_sequence.R tests/testthat/test_plot_coverage.R tests/testthat/test_add_stat_dependency.R tests/testthat/test_comparison_plot.R tests/testthat/test_read_hdx.R tests/testthat/test_woods_plot.R tests/testthat/test_calculate_confidence_limit_values.R tests/testthat/test_calculate_state_deuteration.R tests/testthat/test_plot_position_frequency.R tests/testthat/test_quality_control.R

tests/figs/deps.txt

tests/figs/woods-plot-in-test/woods-plot-2.svg

tests/figs/woods-plot-in-test/woods-plot-1.svg

tests/figs/plot-position-frequency-in-test/position-frequency-plot-1.svg

tests/figs/plot-coverage-in-test/graphic-overlapping-plot-1.svg

tests/figs/comparison-plot-in-test/comparison-plot-2.svg

tests/figs/comparison-plot-in-test/comparison-plot-1.svg

vignettes/transformation.Rmd

vignettes/HDX.bib

vignettes/comparison.csv

vignettes/datafiles.Rmd vignettes/HaDeX.Rmd vignettes/mass_comparison.Rmd man/comparison_plot.Rd man/calculate_kinetics.Rd man/quality_control.Rd man/woods_plot.Rd man/plot_position_frequency.Rd man/HaDeX-package.Rd man/prepare_dataset.Rd man/calculate_state_deuteration.Rd man/add_stat_dependency.Rd man/read_hdx.Rd man/HaDeX_gui.Rd man/calculate_confidence_limit_values.Rd man/plot_coverage.Rd man/plot_kinetics.Rd man/reconstruct_sequence.Rd

HaDeX documentation built on Aug. 12, 2021, 5:20 p.m.