HWIlrPlot: Plot bi-allelic genetic markers in isometric log ratio...
In HardyWeinberg: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
HWIlrPlot R Documentation
Plot bi-allelic genetic markers in isometric log ratio coordinates
Description
HWIlrPlot makes a scatter plot of the isometric log ratio
coordinates for bia-llelic markers.
Usage
HWIlrPlot(X, zeroadj = 0.5, ...)
Arguments
X
Matrix of genotype counts, one marker per row, AA, AB and BB
in three columns
zeroadj
Adjustment for zero values (0.5 by default)
...
Additional arguments for function plot
Value
A matrix of log ratio coordinates.
Author(s)
Jan Graffelman (jan.graffelman@upc.edu)
References
Graffelman, J. and Egozcue, J. J. (2011) Hardy-Weinberg equilibrium: a
nonparametric compositional approach.
In Pawlowsky-Glahn, V. and Buccianti A., editors, Compositional Data Analysis: Theory and Applications, pages 208-217, John Wiley & Sons, Ltd.
See Also
HWAlrPlot,HWClrPlot
Examples
X <- HWClo(HWData(100,100))
HWIlrPlot(X)
HardyWeinberg documentation built on May 7, 2022, 5:05 p.m.
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| HWIlrPlot | R Documentation |
Plot bi-allelic genetic markers in isometric log ratio coordinates
Description
HWIlrPlot makes a scatter plot of the isometric log ratio
coordinates for bia-llelic markers.
Usage
HWIlrPlot(X, zeroadj = 0.5, ...)
Arguments
X |
Matrix of genotype counts, one marker per row, AA, AB and BB in three columns |
zeroadj |
Adjustment for zero values (0.5 by default) |
... |
Additional arguments for function |
Value
A matrix of log ratio coordinates.
Author(s)
Jan Graffelman (jan.graffelman@upc.edu)
References
Graffelman, J. and Egozcue, J. J. (2011) Hardy-Weinberg equilibrium: a nonparametric compositional approach. In Pawlowsky-Glahn, V. and Buccianti A., editors, Compositional Data Analysis: Theory and Applications, pages 208-217, John Wiley & Sons, Ltd.
See Also
HWAlrPlot,HWClrPlot
Examples
X <- HWClo(HWData(100,100)) HWIlrPlot(X)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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