Man pages for HardyWeinberg
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium

afFunction to compute allele frequencies
AFtestExact test of equality of allele frequencies for males and...
agcountsCalculate allele and genotype counts for X-chromosomal...
allelesExtract alleles
AlzheimerGenotype frequencies for 70 SNPs related to Alzheimer's...
dgraffelmanweir.biCalculate Graffelman-Weir exact density for bi-allelic...
dleveneCalculate Levene's exact density for k alleles
dlevene.biCalculate Levene's density for a bi-allelic variant
EAFExactExact test for equality of allele frequencies in males and...
fisherzFisher's z transformation
GenerateSamplesGenerate genotypic compositions
genlabelsLabel genotype counts of a vector or matrix
HapMapCHBChr1Genotype frequencies for 225 SNPs on chromosome 1 of the CHB...
HardyWeinberg-packageStatistical Tests and Graphics for Hardy-Weinberg Equilibrium
HWABOEstimate allele frequencies and test for Hardy-Weinberg...
HWAICCompute Akaike's Information Criterion (AIC) for HWP and EAF...
HWAlltestsPerform all tests for Hardy-Weinberg equilibrium
HWAlrCompute additive log-ratio transformation
HWAlrPlotPlot genetic markers in additive log-ratio coordinates
HWChisqChi square tests for Hardy Weinberg equilibrium
HWChisqMatMatrix version of HWChisq
HWChisqStatsFast computation of chi-square statistics for Hardy-Weinberg...
HWCloConvert genotype counts to compositions
HWClrCompute the centred log-ratio transformation
HWClrPlotPlot genetic markers in centred log-ratio coordinates
HWCondProbABCompute probability of a genotypic sample
HWDCompute disequilibrium statistic D
HWDataGenerate genetic marker data in or out of Hardy-Weinberg...
HWExactExact test for Hardy-Weinberg equilibrium
HWExactMatMatrix version of HWExact
HWExactPreviousExact test for Hardy-Weinberg equilibrium
HWExactStatsComputation of Exact p-values for Hardy-Weinberg equilibrium...
HWfComputation of inbreeding coefficient
HWGenotypePlotScatter plot of the genotype frequencies
HWIlrCompute isometric log ratio coordinates.
HWIlrPlotPlot bi-allelic genetic markers in isometric log ratio...
HWLRAllTestsPerform most relevant likelihood ratio test for...
HWLratioLikelihood ratio test for Hardy Weinberg equilibrium
HWLRtestPerform likelihood ratio test comparing two nested scenarios...
HWMissingTest a bi-allelic marker for Hardy-Weinberg equilibrium in...
HWPermPermutation test for Hardy-Weinberg equilibrium
HWPerm.multPermutation tests fo variants with multiple alleles
HWPosteriorCalculation of posterior probabilities and Bayes factors for...
HWPowerCompute the power of a test for Hardy-Weinberg equilibrium.
HWQqplotA Q-Q plot for Hardy-Weinberg equilibrium
HWTernaryPlotTernary plot with the Hardy-Weinberg acceptance region
HWTriExactExact test for Hardy-Weinberg equilibrium and equality of...
ifisherzInverse Fisher z transformation
JPTmultiallelicsChr7Multi-allelic autosomal variants of the Japanese population...
JPTmultiallelicsChrXMulti-allelic X-chromosomal variants of the Japanese...
JPTsnpsBi-allelic SNPs from a Japanese population
JPTtriallelicsChr7Tri-allelic variants on chromosome 7 of the Japanese (JPT)...
JPTtriallelicsChrXTri-allelic variants on the X-chromosome of the Japanese...
macCompute the minor allele count.
mafFunction to compute minor allele frequencies
MakeCountsCreate genotype counts from bi-allelic marker data
MakeFactorMake factors from genotyping data
MarkersSNP data and intensities
MourantGenotype frequencies for blood group locus MN
n.allelesNumber of alleles
recodeRecode genotype information
strsortSort tokens of a set of strings
ThetatoFConvert theta to an inbreeding coefficient
toTriangularConvert a vector of genotype counts to triangular format
UniqueGenotypeCountsExtract unique genotypic compositions from a matrix
vafComputes the sample variance of the allele frequency for a...
HardyWeinberg documentation built on June 29, 2019, 9:02 a.m.