We propose a generalized linear regression with higher-order interaction terms to assess the influences of genomic features such as DNA-binding proteins and functional elements on long-range contacts from Hi-C experiments.
|Date of publication||2016-10-17 18:59:53|
|Maintainer||Raphael Mourad <email@example.com>|
annotateHiCBin: Annotate Hi-C bins with genomic feature data.
createHiCDataset: Create a dataset for further processing with the R package.
dataExample: Hi-C matrix and ChIP-seq peaks.
filterCouples: Filter Hi-C data based on knowledge.
HiCglmiModel: The generalized linear model with interactions.
HiCglmi-package: Probing Factor-Dependent Long-Range Contacts using Regression...
HiCglmiProcData: Process data for further generalized linear regression with...
readGFBed: Read genomic feature bed file
testDistancePowerLawDistrib: Check log-log linear relation between distance and Hi-C...