Description Usage Arguments Value Author(s) Examples
View source: R/HiCglmiMiscFun.R
Function to import a genomic feature bed file. The bed file must contain coordinates of the genomic features. It can be for instance ChIP-seq peak coordinates or functional element coordinates.
1 | readGFBed(GFBedFile, seqInfoChr)
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GFBedFile |
The name of the bed file. If it does not contain an absolute path, the file name is relative to the current working directory. |
seqInfoChr |
A Seqinfo object for the corresponding genome. |
A GRanges object is returned.
Raphael Mourad
1 2 3 4 | bed_file <- system.file("inst/extdata", "BEAF32_Kc167_CS_dm3.bed", package="HiCfeat")
data(dataExample)
seqInfoChr=dataExample$SeqInfoChr
GFBed=readGFBed(bed_file,seqInfoChr)
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