filterCouples: Filter Hi-C data based on knowledge.
In HiCglmi: Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
Description
Usage
Arguments
Value
Author(s)
View source: R/HiCglmiMiscFun.R
Description
This is an internal function. Function to filter Hi-C data for processing. Hi-C data are filtered according to a set of regions to focus on.
Usage
1
filterCouples(Left_IC_GR, Right_IC_GR, HiC_data, Filters_GR, FilterMode)
Arguments
Left_IC_GR
GRanges object.
Right_IC_GR
GRanges object.
HiC_data
Matrix.
Filters_GR
GRanges object.
FilterMode
Character object.
Value
A list of objects.
Author(s)
Raphael Mourad
HiCglmi documentation built on Aug. 20, 2019, 1:04 a.m.
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Description Usage Arguments Value Author(s)
View source: R/HiCglmiMiscFun.R
Description
This is an internal function. Function to filter Hi-C data for processing. Hi-C data are filtered according to a set of regions to focus on.
Usage
1 | filterCouples(Left_IC_GR, Right_IC_GR, HiC_data, Filters_GR, FilterMode)
|
Arguments
Left_IC_GR |
GRanges object. |
Right_IC_GR |
GRanges object. |
HiC_data |
Matrix. |
Filters_GR |
GRanges object. |
FilterMode |
Character object. |
Value
A list of objects.
Author(s)
Raphael Mourad
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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