IFP: Identifying Functional Polymorphisms

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A suite for identifying causal models using relative concordances and identifying causal polymorphisms in case-control genetic association data, especially with large controls re-sequenced data.

Author
Leeyoung Park
Date of publication
2016-02-04 16:32:21
Maintainer
Leeyoung Park <lypark@yonsei.ac.kr>
License
GPL (>= 2)
Version
0.2.1
URLs

View on CRAN

Man pages

allele.freq
Allele Frequency Computation from Genotype Data
allele.freq.G
Allele Frequency Computation from the sequencing data with a...
apoe
Genetic data of APOE gene region
apoe.G
Sequencing data of APOE gene region from the 1000 Genomes...
drgegggne.gm
causal models with all possible causal factors: G, G*G, G*E...
drgegne.gm
causal models with three possible causal factors: G, G*E and...
drgene.gm
causal models with G*E and E
drgen.gm
causal models with G*E
drggn.gm
causal models with G*G
drgn.gm
causal models with G
error.rates
Error Rates Estimation for Likelihood Ratio Tests Designed...
geno.freq.G
Genotype Frequency Computation from the sequencing data with...
genotype.G
Conversion to Genotypes from Alleles using the sequencing...
hap.freq
Estimation of Haplotype Frequencies with Two SNPs
iter.mcmc
mcmc inference of causal models with all possible causal...
lrt
Likelihood Ratio Tests for Identifying Number of Functional...
lrt.G
Likelihood Ratio Tests for Identifying Disease Polymorphisms...

Files in this package

IFP
IFP/src
IFP/src/Makevars
IFP/src/lrtG.cpp
IFP/src/varEstR.cpp
IFP/NAMESPACE
IFP/data
IFP/data/apoeG.RData
IFP/data/apoe.RData
IFP/R
IFP/R/logMCMC.post.R
IFP/R/drggn.gm.R
IFP/R/lrtB.R
IFP/R/drgegggne.gm.R
IFP/R/drgene.gm.R
IFP/R/read.bugs.R
IFP/R/ddirichlet.MCMCpack.R
IFP/R/geno.freq.G.R
IFP/R/hap.freq.R
IFP/R/genotype.G.R
IFP/R/iter.mcmc.R
IFP/R/qpi.update.R
IFP/R/drgn.gm.R
IFP/R/lrt.R
IFP/R/drgen.gm.R
IFP/R/error.rates.R
IFP/R/qp.update.R
IFP/R/drgegne.gm.R
IFP/R/allele.freq.G.R
IFP/R/allele.freq.R
IFP/R/rdirichlet.MCMCpack.R
IFP/R/varEst.R
IFP/R/zzz.R
IFP/R/lrt.G.R
IFP/MD5
IFP/DESCRIPTION
IFP/man
IFP/man/allele.freq.Rd
IFP/man/drgen.gm.Rd
IFP/man/allele.freq.G.Rd
IFP/man/drgene.gm.Rd
IFP/man/iter.mcmc.Rd
IFP/man/drgegne.gm.Rd
IFP/man/apoe.G.Rd
IFP/man/genotype.G.Rd
IFP/man/lrt.Rd
IFP/man/lrt.G.Rd
IFP/man/drgegggne.gm.Rd
IFP/man/drgn.gm.Rd
IFP/man/geno.freq.G.Rd
IFP/man/drggn.gm.Rd
IFP/man/apoe.Rd
IFP/man/hap.freq.Rd
IFP/man/error.rates.Rd