Description Usage Arguments Value References See Also Examples
Compute p-values and likelihoods of all possible models for a given number of disease SNP(s).
1 |
n.fp |
number of disease SNPs for tests. |
genoT |
matrix of control genotypes. Each row indicates a variant, and each column indicates a haplotype of an individual. Two alleles of 0 and 1 are allowed. |
genoC |
matrix of case genotypes. Each row indicates a variant, and each column indicates a haplotype of an individual. Two alleles of 0 and 1 are allowed. |
matrix of likelihood ratio test results. First row indicates the index, and following n.fp rows indicate the model for each set of disease polymorphisms, and followed by p-values, -2 log(likelihood ratio) with corrections for variances, and the degree of freedom.
L. Park, J. Kim, Rare high-impact disease variants: properties and identification, Genetics Research, 2016 Mar; 98, e6.
allele.freq.G
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