Description Usage Arguments Value See Also Examples
provides concordance probabilities of relative pairs for a causal model with G*G component
1 | drggn(fd,fr)
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fd |
an array (size=number of dominant genes+recessive genes) of dominant gene frequencies including 0 values of recessive genes of G*G component |
fr |
an array (size=number of dominant genes+recessive genes) of recessive gene frequencies including 0 values of dominant genes of G*G component |
a list of PLI and a matrix of NN, ND, and DD probabilities of 9 relative pairs: 1:mzt,2:parent-offspring,3:dzt,4:sibling,5:2-direct(grandparent-grandchild),6:3rd(uncle-niece),7:3-direct(great-grandparent-great-grandchild),8:4th (causin),9:4d(great-great-grandparent-great-great-grandchild)
drgegggne
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | ### PLI=0.01.
ppt<-0.01
### g*g model
pp<-ppt # the proportion of G*G component in total populations
gd<-sqrt(pp) # dominant gene proportion = recessive gene proportion
fd<-array(1-sqrt(1-gd^(1/2)),2) # two dominant genes
tt<-2 # the number of recessive genes: 2
temp<-(pp/gd)^(1/2/tt)
fr<-c(array(0,length(fd)),array(temp,tt))
fd<-c(fd,array(0,tt))
drggn(fd,fr)
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