Man pages for IGM.MEA
IGM MEA Analysis
| caclulate.burst.features | Filter spikes and bursts in recording objects |
| caclulate.spike.features | Filter spikes and bursts in recording objects |
| calc.burst.distributions | calculate and plot burst featues distributions |
| calc.burst.summary | Calculate average and standard deviation of the bursting... |
| calculate.isis | Calculate inter spike intervals |
| calculate.network.bursts | Compute network bursts for a list of MEA recordings. |
| calculate.network.spikes | Compute the netwrok spikes statistics from spike lists. |
| dist.perm | Burst distribution permutations |
| filter.wells | Filter wells |
| generate.raster.plot | generate.raster.plot |
| get.burst.info | get burst feature information |
| get.data | get.data |
| get.experimental.log.file | get.experimental.log.file |
| get.file.basename | get.file.basename |
| get.num.AE | get.num.AE |
| get.project.plate.name | get.project.plate.name |
| get.wt | Get WT |
| has.network.spikes | A utility function to check if network spikes are detected. |
| IGM.aggregate.features | Aggregate Feature Data |
| IGM.compute.mean.firingrate.by.well | mean.firingrate.by.well |
| IGM.plot.active.wells.network.spikes | plot.active.wells.network.spikes |
| IGM.plot.mean.firingrate.by.eletrode.by.div | plot.mean.firingrate.by.eletrode.by.div |
| IGM.plot.mean.firingrate.by.well.by.div | plot.mean.firingrate.by.well.by.div |
| IGM.plot.network.spikes | Generic method for plotting network spikes. |
| IGM.plot.plate.summary.for.bursts | Plot burst features |
| IGM.plot.plate.summary.for.spikes | plot.plate.summary.for.spikes |
| IGM.write.UI.to.log | IGM.write.UI.to.log |
| IGM.xyplot.network.spikes | xyplot for network spikes at the plate level. |
| isi | isi |
| load.spikelist | Load Robject File |
| mi.find.bursts | Find bursts |
| NB.matrix.to.feature.dfs | Convert network burst data matrix to a list of data frames. |
| parameters | A list of parameters with default values that user can... |
| permute.features.and.plot | Write PDF |
| read.spikelist | Axion convert spkList to Robject |
| remove.spikes | remove.spikes |
| S | example 'S' object |
| si.find.bursts | Find bursts |
| summarize.network.spikes | Generate network spikes based features. |
| write.features.to.files | Write feature data to an output file |
| write.network.spikes.to.csv | Summarize and write netowrk spikes features into a csv file. |
| write.plate.summary.for.bursts | Prints bursting features |
| write.plate.summary.for.spikes | write.plate.summary.for.spikes |
