write.plate.summary.for.bursts: Prints bursting features

Description Usage Arguments Value Examples

View source: R/bursts.R

Description

The function reads the MEA data structure and uses the 'allb' list built using mi.find.bursts. It then prints all bursting features summary per well and per channel in _bursts.csv and _well_bursts.csv

Usage

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Arguments

s

MEA data structure

outputdir

Output directory

Value

Output file _bursts.csv holds all features generated for bursts per well and per channel:

treatment

the treatment/genotype based on the experimental log file plan

well

well number

nAE

number of active electrodes

nAB

number of electrodes with bursts

duration

total duration of bursts

mean.dur

mean duration of bursts

mean.freq

firing rate (Hz)

nbursts

number of bursts

bursts.per.sec

bursts/second.matrix(nrow=0,ncol=1)

bursts.per.min

bursts/min

sd.dur

sd of burst duration

mean.freq.in.burst

average frequency of spikes in a burst

sd.freq.in.burst

sd of frequency of spikes in a burst

mean.spikes.in.burst

mean number of spikes in a burst

sd.spikes.in.burst

sd of number of spikes in a burst

total.spikes.in.burst

total number of spikes in a bursts

per.spikes.in.burst

percent of spikes in a burst

mean.ISIs

mean ISI within a burst

sd.ISIs

sd ISI within a burst

mean.IBIs

mean IBI

sd.IBIs

sd of IBIs

cv.IBIs

Coefficient of variation of IBI (= mean.IBI/sd.IBI)

file

input recording file

Examples

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data("S")  
d<-dir.create(paste0(getwd(),"/Analysis") )
s<-list(); s[[1]]<-S
write.plate.summary.for.bursts(s, paste0(getwd() ) )

IGM.MEA documentation built on May 29, 2017, 11:07 p.m.