generate.raster.plot: generate.raster.plot

In IGM.MEA: IGM MEA Analysis

Description

Creates a pdf raster plot of selected user selected well from an 's' object. Options include verticle lines showing network spike times, vertical bars showing bursts as well as # showing count of spikes in burst and network spikes.

Usage

generate.raster.plot(RobjectFile = NULL, outputdir = NULL, well.for.raster
                 = NULL, interval.for.raster = NULL, show.bursts = F,
                 show.burst.number = F, show.networkspikes = F,
                 show.ns.number = F,  show.nb=F, window.size=NULL)

Arguments

RobjectFile	Default value is NULL, in which case tcltk pop-up file chooser will prompt user to select an 's' object. Otherwise, provide a full path to to a .RData 's' object that contains burst and network data.
outputdir	A directory (character string in quotes) where pdf is to be saved. Default is NULL, in which case the plot will be saved in the directory RobjectFile location.
well.for.raster	A well name, character string, from plate. e.g. well.for.raster="A3". Default is NULL, in which case first well in plate will appear in plot.
interval.for.raster	A vector of min and max time (s) for raster marks. e.g. interval.for.raster=c(30,60) Default is NULL, in which case the whole recording interval will be used.
show.bursts	A boolean value sets whether bursts are indicated by red horizontal line (TRUE/FALSE) e.g. show.bursts=FALSE Default=FALSE
show.burst.number	A boolean value sets whether # spikes/bursts are indicated (TRUE/FALSE). show.bursts must be set to true in order that show.burst.number=T e.g. show.burst.number=FALSE Default=FALSE
show.networkspikes	A boolean value sets whether network spikes are indicated by green vertical line (TRUE/FALSE) e.g. show.networkspikes=FALSE Default=FALSE
show.ns.number	A boolean value sets whether # electrodes in network spikes are indicated (TRUE/FALSE) e.g. show.ns.number=FALSE Default=FALSE
show.nb	A boolean value sets whether network bursts should be indicated in raster by orange horizontal lines (TRUE/FALSE) e.g. show.ns.number=FALSE Default=FALSE
window.size	A numeric value indicating which of the three smoothing sizes available in the R-object should be used in network burst identification e.g. show.ns.number=10Default=NULL

Value

A pdf raster plot will be displayed in system viewer.

Author(s)

Diana Hall

Examples

##generate.raster.plot(RobjectFile=NULL,
#                      well.for.raster=NULL, 
#                      interval.for.raster=NULL,
#                      show.bursts=F, 
#                      show.burst.number=F, 
#                      show.networkspikes=F,
#                      show.ns.number=F,
#                      show.nb=F,
#                      window.size=NULL )

IGM.MEA documentation built on May 29, 2017, 11:07 p.m.