filter.wells: Filter wells

In IGM.MEA: IGM MEA Analysis

Description

Filter out wells for which the number of active electrodes is less than 4, at least 70 percent of the time

Usage

filter.wells(unfiltered.df, nae,min.electrodes = 4, 
well.filter.maximum.DIV.inactive.ratio = 0.5)

Arguments

unfiltered.df	Dataframe generated by the spike.features() function
nae	A dataframe containing the number of active electrodes for the recording
min.electrodes	Minimum number of active electrode to consider a well for analysis
well.filter.maximum.DIV.inactive.ratio	The DIV inactive/active well ratio below which a well will be considered active for a set of DIVs

Value

A dataframe identical in format to the input, except that wells that do not meet the filtering criteria are removed.

Examples

	#data("S")
	#data("parameters")
	#s<-list(); s[[1]]<-S
	# spike.features<-IGM.aggregate.features(s, feat.type="spike", parameters )
	# nae = spike.features$nAE
  # filtered.spike.features = lapply(spike.features, function(x) filter.wells(x, nae))

IGM.MEA documentation built on May 29, 2017, 11:07 p.m.