calculate.network.bursts: Compute network bursts for a list of MEA recordings.

In IGM.MEA: IGM MEA Analysis

Description

For a list of MEA recordings, ususally from the same plate at different time point,This function detects and report network burst features at the well level.

Usage

calculate.network.bursts(s,Sigma, min_electrodes, local_region_min_nAE)

Arguments

s	A list of MEA recordings, typically from the same MEA plate at different time point.
Sigma	The window size used to generate network bursts.
min_electrodes	Minimum number of electrodes to call a network burst
local_region_min_nAE	Indicates if an adaptive threthold method should be used.

Value

Returns an object containing summary, nb.all, nb.features, result, and nb.features.merged.

summary	brief summary
nb.all	Each well has 3 data frames with nb times, one for each smoothing window
nb.features	a list containing a data-frame for each DIV analyzed
result	for each DIV analyzed, information on the DIV, times of nb for each well and each smoothing window
nb.features.merged	data frame with nb related features averaged across DIVs

Author(s)

Quanli Wang

References

Add reference to Yi-Fan Lu's paper when it is in press.

IGM.MEA documentation built on May 29, 2017, 11:07 p.m.