Files in LDATS
Latent Dirichlet Allocation Coupled with Time Series Analyses

MD5
NEWS.md
LICENSE
DESCRIPTION
README.md
NAMESPACE
inst/WORDLIST
inst/doc/rodents-example.html
inst/doc/rodents-example.Rmd inst/doc/rodents-example.R inst/doc/LDATS_codebase.R
inst/doc/paper-comparison.html
inst/doc/paper-comparison.Rmd inst/doc/LDATS_codebase.Rmd
inst/doc/LDATS_codebase.html
inst/doc/paper-comparison.R vignettes/rodents-example.Rmd vignettes/paper-comparison.Rmd vignettes/LDATS_codebase.Rmd
vignettes/rodents-example-files/lda_model_set.Rds
vignettes/rodents-example-files/changepoint_models.Rds
vignettes/rodents-example-files/lda_ts_results.Rds
R/TS_plots.R R/LDA_TS_plots.R R/data.R R/LDATS.R R/LDA_plots.R R/LDA_TS.R R/ptMCMC.R R/utilities.R R/TS.R R/multinom_TS.R R/simulate.R R/TS_on_LDA.R R/LDA.R man/prep_TS_data.Rd man/prep_temp_sequence.Rd man/mirror_vcov.Rd man/iftrue.Rd man/check_changepoints.Rd man/logLik.multinom_TS_fit.Rd man/check_formulas.Rd man/TS_diagnostics_plot.Rd man/print_model_run_message.Rd man/multinom_TS_chunk.Rd man/set_LDA_plot_colors.Rd man/check_formula.Rd man/posterior_plot.Rd man/LDA_msg.Rd man/plot.TS_fit.Rd man/sim_LDA_data.Rd man/prep_proposal_dist.Rd man/step_chains.Rd man/LDATS.Rd man/print.LDA_TS.Rd man/AICc.Rd man/print.TS_on_LDA.Rd man/set_gamma_colors.Rd man/messageq.Rd man/diagnose_ptMCMC.Rd man/set_LDA_TS_plot_cols.Rd man/modalvalue.Rd man/check_control.Rd man/check_LDA_models.Rd man/LDA_TS.Rd man/check_document_term_table.Rd man/plot.LDA_VEM.Rd man/check_seeds.Rd man/prep_ptMCMC_inputs.Rd man/TS_on_LDA.Rd man/print.TS_fit.Rd man/prep_cpts.Rd man/package_LDA_set.Rd man/LDA_set_control.Rd man/summarize_rhos.Rd man/logLik.LDA_VEM.Rd man/package_TS_on_LDA.Rd man/memoise_fun.Rd man/trace_plot.Rd man/est_regressors.Rd man/check_topics.Rd man/select_LDA.Rd man/sim_TS_data.Rd man/est_changepoints.Rd man/swap_chains.Rd man/TS_summary_plot.Rd man/prep_LDA_control.Rd man/check_timename.Rd man/set_rho_hist_colors.Rd man/summarize_etas.Rd man/jornada.Rd man/set_TS_summary_plot_cols.Rd man/check_weights.Rd man/plot.LDA_TS.Rd man/prep_pbar.Rd man/verify_changepoint_locations.Rd man/rho_lines.Rd man/rodents.Rd man/logLik.TS_fit.Rd man/prep_ids.Rd man/check_nchangepoints.Rd man/package_TS.Rd man/check_document_covariate_table.Rd man/TS_control.Rd man/sim_LDA_TS_data.Rd man/package_LDA_TS.Rd man/proposed_step_mods.Rd man/LDA_TS_control.Rd man/expand_TS.Rd man/logsumexp.Rd man/count_trips.Rd man/LDA_set.Rd man/TS.Rd man/prep_saves.Rd man/softmax.Rd man/package_chunk_fits.Rd man/plot.LDA_set.Rd man/ecdf_plot.Rd man/select_TS.Rd man/document_weights.Rd man/autocorr_plot.Rd man/prep_chunks.Rd man/normalize.Rd man/multinom_TS.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test-04-LDA_TS.R tests/testthat/test-07-ptMCMC.R tests/testthat/test-11-TS_plots.R tests/testthat/test-06-multinom_TS.R tests/testthat/test-03-lda_plot.R tests/testthat/test-10-TS_on_LDA.R tests/testthat/test-08-simulate.R tests/testthat/test-09-TS.R tests/testthat/test-02-lda.R tests/testthat/test-01-data.R tests/testthat/test-12-utilities.R tests/testthat/test-05-LDA_TS_plots.R
tests/figs/deps.txt
tests/figs/check-ts-plot-functions/base-ts-diagnostic-plot.svg
tests/figs/check-ts-plot-functions/base-ts-rho-plot.svg
tests/figs/check-ts-plot-functions/base-ts-trace-plot.svg
tests/figs/check-ts-plot-functions/base-ts-ecdf-plot.svg
tests/figs/check-ts-plot-functions/base-ts-gamma-plot.svg
tests/figs/check-ts-plot-functions/base-ts-rho-diagnostic-plot.svg
tests/figs/check-ts-plot-functions/base-ts-posterior-plot.svg
tests/figs/check-ts-plot-functions/rho-line-plot.svg
tests/figs/check-ts-plot-functions/base-ts-eta-diagnostic-plot.svg
tests/figs/check-ts-plot-functions/base-ts-autocorr-plot.svg
tests/figs/check-ts-plot-functions/base-ts-plot.svg
tests/figs/check-ts-plot-functions/base-ts-summary-plot.svg
tests/figs/check-lda-plot-functions/lda-plot-with-time-x.svg
tests/figs/check-lda-plot-functions/base-lda-plot-top-panel.svg
tests/figs/check-lda-plot-functions/base-lda-plot.svg
tests/figs/check-lda-plot-functions/base-lda-set-selected-plot.svg
tests/figs/check-lda-plot-functions/base-lda-plot-bottom-panel.svg
tests/figs/check-lda-ts-plot-functions/base-lda-ts-non-interactive-plot.svg
data/jornada.RData
data/rodents.RData
LDATS documentation built on Aug. 1, 2019, 5:07 p.m.