LDtests: Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
Version 1.0

Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)

AuthorAlex Lewin
Date of publicationNone
MaintainerAlex Lewin <a.m.lewin@imperial.ac.uk>
LicenseGPL
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("LDtests")

Popular man pages

Fisher1sided: 1-sided Fisher's test of linkage disequilibrium
HWE2sided: P-values for three different tests of HWE
HWE2sided.table: Table and plot of Hardy-Weinberg p-values for all 2x2 tables...
LD2sided.pvals: P-values and Linkage Disequilibrium measures for several...
LD2sided.tables: Tables of p-values and Linkage Disequilibrium measures for...
LDtests.package: Exact tests for Linkage Disequilibrium and Hardy-Weinberg...
See all...

All man pages Function index File listing

Man pages

Fisher1sided: 1-sided Fisher's test of linkage disequilibrium
HWE2sided: P-values for three different tests of HWE
HWE2sided.table: Table and plot of Hardy-Weinberg p-values for all 2x2 tables...
LD2sided.pvals: P-values and Linkage Disequilibrium measures for several...
LD2sided.tables: Tables of p-values and Linkage Disequilibrium measures for...
LDtests.package: Exact tests for Linkage Disequilibrium and Hardy-Weinberg...

Functions

Files

DESCRIPTION
man
man/Fisher1sided.Rd
man/HWE2sided.Rd
man/HWE2sided.table.Rd
man/LD2sided.pvals.Rd
man/LD2sided.tables.Rd
man/LDtests.package.Rd
NAMESPACE
R
R/Fisher1sided.R
R/HWE2sided.R
R/HWE2sided.table.R
R/LD2sided.pvals.R
R/LD2sided.tables.R
LDtests documentation built on May 20, 2017, 3:27 a.m.

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