LDtests: Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium

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Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)

Author
Alex Lewin
Date of publication
None
Maintainer
Alex Lewin <a.m.lewin@imperial.ac.uk>
License
GPL
Version
1.0

View on CRAN

Man pages

Fisher1sided
1-sided Fisher's test of linkage disequilibrium
HWE2sided
P-values for three different tests of HWE
HWE2sided.table
Table and plot of Hardy-Weinberg p-values for all 2x2 tables...
LD2sided.pvals
P-values and Linkage Disequilibrium measures for several...
LD2sided.tables
Tables of p-values and Linkage Disequilibrium measures for...
LDtests.package
Exact tests for Linkage Disequilibrium and Hardy-Weinberg...

Files in this package

LDtests
LDtests/DESCRIPTION
LDtests/man
LDtests/man/Fisher1sided.Rd
LDtests/man/HWE2sided.Rd
LDtests/man/HWE2sided.table.Rd
LDtests/man/LD2sided.pvals.Rd
LDtests/man/LD2sided.tables.Rd
LDtests/man/LDtests.package.Rd
LDtests/NAMESPACE
LDtests/R
LDtests/R/Fisher1sided.R
LDtests/R/HWE2sided.R
LDtests/R/HWE2sided.table.R
LDtests/R/LD2sided.pvals.R
LDtests/R/LD2sided.tables.R