Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)
|Date of publication||None|
|Maintainer||Alex Lewin <email@example.com>|
|Package repository||View on CRAN|
|Installation||Install the latest version of this package by entering the following in R:
|Fisher1sided: 1-sided Fisher's test of linkage disequilibrium|
|HWE2sided: P-values for three different tests of HWE|
|HWE2sided.table: Table and plot of Hardy-Weinberg p-values for all 2x2 tables...|
|LD2sided.pvals: P-values and Linkage Disequilibrium measures for several...|
|LD2sided.tables: Tables of p-values and Linkage Disequilibrium measures for...|
|LDtests.package: Exact tests for Linkage Disequilibrium and Hardy-Weinberg...|
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