Fisher1sided: 1-sided Fisher's test of linkage disequilibrium
In LDtests: Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
1-sided Fisher's test of linkage disequilibrium
Usage
1
Fisher1sided(ctable, side = "great")
Arguments
ctable
Vector of the 4 entries in the 2x2 contingency table
side
"great" or "less" according to which tail you are interested in
Value
pval.Fish
P-value
Prob
Probability of the contingency under the null
yobs
The observed n11 (first cell in the table)
n1
Row margin
n2
Column margin
nn
Sample size
Author(s)
Alex Lewin
References
Kulinskaya and Lewin 2008
Examples
1
2
ctable <- c(4,5,1,20)
Fisher1sided(ctable)
Example output
[1] 0 1 2 3 4 5
$pval.Fish
[1] 0.01945181
$Prob
[1] 0.01856764
$yobs
[1] 4
$n1
[1] 9
$n2
[1] 5
$nn
[1] 30
LDtests documentation built on May 2, 2019, 2:44 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
1-sided Fisher's test of linkage disequilibrium
Usage
1 | Fisher1sided(ctable, side = "great")
|
Arguments
ctable |
Vector of the 4 entries in the 2x2 contingency table |
side |
"great" or "less" according to which tail you are interested in |
Value
pval.Fish |
P-value |
Prob |
Probability of the contingency under the null |
yobs |
The observed n11 (first cell in the table) |
n1 |
Row margin |
n2 |
Column margin |
nn |
Sample size |
Author(s)
Alex Lewin
References
Kulinskaya and Lewin 2008
Examples
1 2 | ctable <- c(4,5,1,20)
Fisher1sided(ctable)
|
Example output
[1] 0 1 2 3 4 5
$pval.Fish
[1] 0.01945181
$Prob
[1] 0.01856764
$yobs
[1] 4
$n1
[1] 9
$n2
[1] 5
$nn
[1] 30
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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