LD2sided.tables: Tables of p-values and Linkage Disequilibrium measures for...
In LDtests: Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
This function calculates p-values and Linkage Disequilibrium measures for all possible 2x2 contingency tables consistent with the margins of the input observed contingency table. See LD2sided.pvals for details of the Linkage Disequilibrium measures and tests used.
Usage
1
LD2sided.tables(ctable)
Arguments
ctable
Vector of the 4 entries in the 2x2 contingency table
Details
This function prints out three tables. First lists all contingency tables consistent with the margins of the input table. Second lists the orderings of the contingency tables according to the different LD measures. Third gives the different LD p-values for all the contingency tables.
Value
Outputs the table of LD p-values for all the contingency tables consistent with the margins of the input table.
Author(s)
Alex Lewin
References
Kulinskaya and Lewin 2008
See Also
Examples
1
2
3
ctable <- c(0,9,5,16)
LD2sided.tables(ctable)
LD2sided.pvals(ctable)$pval.Fish
LDtests documentation built on May 2, 2019, 2:44 p.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
This function calculates p-values and Linkage Disequilibrium measures for all possible 2x2 contingency tables consistent with the margins of the input observed contingency table. See LD2sided.pvals for details of the Linkage Disequilibrium measures and tests used.
Usage
1 | LD2sided.tables(ctable)
|
Arguments
ctable |
Vector of the 4 entries in the 2x2 contingency table |
Details
This function prints out three tables. First lists all contingency tables consistent with the margins of the input table. Second lists the orderings of the contingency tables according to the different LD measures. Third gives the different LD p-values for all the contingency tables.
Value
Outputs the table of LD p-values for all the contingency tables consistent with the margins of the input table.
Author(s)
Alex Lewin
References
Kulinskaya and Lewin 2008
See Also
Examples
1 2 3 | ctable <- c(0,9,5,16)
LD2sided.tables(ctable)
LD2sided.pvals(ctable)$pval.Fish
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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