Man pages for MCMC.OTU
Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
| getNormalizedOTUdata | Extracts mcmc.otu model predictions |
| green.data | Symbiodinium sp. ITS2 OTUs from Orbicella franksi and O.... |
| logLin | prepares OTU counts data for PCA analysis using... |
| mcmc.otu | Analyzes multivariate counts data using poisson-lognormal... |
| MCMC.OTU-package | Bayesian analysis of multivariate counts data in DNA... |
| mcmc.pval | calculates p-value based on Bayesian z-score or MCMC sampling |
| otuByAutocorr | Selects OTUs for which MCMC-based parameter estimates are... |
| otuStack | Prepares OTU counts data for MCMC model fitting using... |
| OTUsummary | Summarizes and plots results of mcmc.otu() function series. |
| padjustOTU | Adjusts p-values in the OTU summary for multiple comparisons. |
| panel.cor | accessory function for pairs() to display Pearson... |
| panel.cor.pval | accessory function for pairs() to display pvalue of the... |
| purgeOutliers | Removes outlier samples and OTUs. |
| signifOTU | Finds differentially represented OTUs. |
| startedLog | prepares OTU counts data for PCA analysis using started-log... |
| summaryPlotOTU | Wrapper function for ggplot2 to make bar and line graphs of... |
