green.data: Symbiodinium sp. ITS2 OTUs from Orbicella franksi and O....
In MCMC.OTU: Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
Description
Usage
Format
Source
References
Description
Symbiodinium sp. ITS2 OTUs from Orbicella franksi and O. faveolata corals at the Flower Garden Banks. Two banks (east and west), two coral species, five OTUs.
Usage
1
Format
A data frame with 58 observations on the following 156 variables.
speciesa factor with levels faveolata franksi
banka factor with levels east west
samplea factor with levels EFAV117 EFAV123 EFAV128 EFAV137 EFAV140 EFAV142 EFAV143 EFAV145 EFAV150 EFAV153 EFAV154 EFAV157 EFAV161 EFAV162 EFRA101 EFRA102 EFRA105 EFRA216 EFRA218 EFRA221 EFRA222 EFRA224 EFRA231 EFRA232 EFRA233 EFRA236 EFRA82 EFRA90 EFRA91 WFAV102 WFAV103 WFAV107 WFAV111 WFAV112 WFAV188 WFAV191 WFAV89 WFAV91 WFAV94 WFAV95 WFAV97 WFAV98 WFAV99 WFRA106 WFRA107 WFRA112 WFRA114 WFRA115 WFRA116 WFRA117 WFRA198 WFRA199 WFRA200 WFRA201 WFRA202 WFRA203 WFRA205 WFRA210
H35JRAZ01A0C9Ja numeric vector
H35JRAZ01A0D1Ba numeric vector
H35JRAZ01A0RQOa numeric vector
H35JRAZ01A1FKLa numeric vector
H35JRAZ01A1GT3a numeric vector
H35JRAZ01A1NMHa numeric vector
H35JRAZ01A1SO3a numeric vector
H35JRAZ01A1VUDa numeric vector
H35JRAZ01A22NWa numeric vector
H35JRAZ01A2ZJKa numeric vector
H35JRAZ01A2ZYYa numeric vector
H35JRAZ01A30IEa numeric vector
H35JRAZ01A32BSa numeric vector
H35JRAZ01A3DXYa numeric vector
H35JRAZ01A3UJSa numeric vector
H35JRAZ01A4BHGa numeric vector
H35JRAZ01A4F3Oa numeric vector
H35JRAZ01A4G6Oa numeric vector
H35JRAZ01A4O8Aa numeric vector
H35JRAZ01A4U5Oa numeric vector
H35JRAZ01A5LTBa numeric vector
H35JRAZ01A5O9Ua numeric vector
H35JRAZ01A6ITEa numeric vector
H35JRAZ01A771Fa numeric vector
H35JRAZ01A7EP4a numeric vector
H35JRAZ01A7SMYa numeric vector
H35JRAZ01A8A59a numeric vector
H35JRAZ01A8X2Ya numeric vector
H35JRAZ01A93HVa numeric vector
H35JRAZ01A9TZYa numeric vector
H35JRAZ01AMZP0a numeric vector
H35JRAZ01AN7JFa numeric vector
H35JRAZ01ANHEDa numeric vector
H35JRAZ01ANUPTa numeric vector
H35JRAZ01AO7GSa numeric vector
H35JRAZ01AON2Sa numeric vector
H35JRAZ01APP5Aa numeric vector
H35JRAZ01APPG5a numeric vector
H35JRAZ01APWEHa numeric vector
H35JRAZ01APYLMa numeric vector
H35JRAZ01AQIU4a numeric vector
H35JRAZ01AR1R8a numeric vector
H35JRAZ01AR8Q4a numeric vector
H35JRAZ01ARD6Ma numeric vector
H35JRAZ01ARKYWa numeric vector
H35JRAZ01ARSTDa numeric vector
H35JRAZ01ARZ7La numeric vector
H35JRAZ01AS8ZFa numeric vector
H35JRAZ01ASV28a numeric vector
H35JRAZ01ATSK2a numeric vector
H35JRAZ01ATZCYa numeric vector
H35JRAZ01AU38Ta numeric vector
H35JRAZ01AUMOEa numeric vector
H35JRAZ01AUTH5a numeric vector
H35JRAZ01AUX8Xa numeric vector
H35JRAZ01AVB0Qa numeric vector
H35JRAZ01AVFAXa numeric vector
H35JRAZ01AVX70a numeric vector
H35JRAZ01AWGQCa numeric vector
H35JRAZ01AXA3Za numeric vector
H35JRAZ01AXGLDa numeric vector
H35JRAZ01AXVIRa numeric vector
H35JRAZ01AY2DEa numeric vector
H35JRAZ01AY6KBa numeric vector
H35JRAZ01AZFWSa numeric vector
H35JRAZ01AZTSTa numeric vector
H35JRAZ01BB9FUa numeric vector
H35JRAZ01BBITPa numeric vector
H35JRAZ01BBSV6a numeric vector
H35JRAZ01BD2HVa numeric vector
H35JRAZ01BDBD6a numeric vector
H35JRAZ01BDTVFa numeric vector
H35JRAZ01BE95Xa numeric vector
H35JRAZ01BEHEKa numeric vector
H35JRAZ01BEMYIa numeric vector
H35JRAZ01BEP0Ja numeric vector
H35JRAZ01BFNRTa numeric vector
H35JRAZ01BFVYJa numeric vector
H35JRAZ01BG87Na numeric vector
H35JRAZ01BGG1Aa numeric vector
H35JRAZ01BGN2Ja numeric vector
H35JRAZ01BGUP9a numeric vector
H35JRAZ01BH7VVa numeric vector
H35JRAZ01BIHI3a numeric vector
H35JRAZ03C08W3a numeric vector
H35JRAZ03C0K1Ka numeric vector
H35JRAZ03C141Ra numeric vector
H35JRAZ03C16B4a numeric vector
H35JRAZ03C1INYa numeric vector
H35JRAZ03C1WD2a numeric vector
H35JRAZ03C2344a numeric vector
H35JRAZ03C2919a numeric vector
H35JRAZ03C2CBIa numeric vector
H35JRAZ03C2DMJa numeric vector
H35JRAZ03C2MH3a numeric vector
H35JRAZ03C2PQYa numeric vector
H35JRAZ03C32WGa numeric vector
H35JRAZ03C3ANPa numeric vector
H35JRAZ03C5910a numeric vector
H35JRAZ03C5CKRa numeric vector
H35JRAZ03C5G30a numeric vector
H35JRAZ03C60I8a numeric vector
H35JRAZ03C6AF1a numeric vector
H35JRAZ03C6E0Wa numeric vector
H35JRAZ03C6LU3a numeric vector
H35JRAZ03C6Q3Va numeric vector
H35JRAZ03C75OMa numeric vector
H35JRAZ03C7GCEa numeric vector
H35JRAZ03C7P6Ja numeric vector
H35JRAZ03C8JJTa numeric vector
H35JRAZ03C9MVIa numeric vector
H35JRAZ03CX46Ja numeric vector
H35JRAZ03CX5BCa numeric vector
H35JRAZ03CXVYSa numeric vector
H35JRAZ03DA80Ga numeric vector
H35JRAZ03DALPNa numeric vector
H35JRAZ03DAW5Ja numeric vector
H35JRAZ03DAXEIa numeric vector
H35JRAZ03DC5UZa numeric vector
H35JRAZ03DCCVAa numeric vector
H35JRAZ03DCGCEa numeric vector
H35JRAZ03DCXOXa numeric vector
H35JRAZ03DE7WWa numeric vector
H35JRAZ03DED1Sa numeric vector
H35JRAZ03DEJ2Sa numeric vector
H35JRAZ03DF9NAa numeric vector
H35JRAZ03DFE9Wa numeric vector
H35JRAZ03DFZXIa numeric vector
H35JRAZ03DG0DKa numeric vector
H35JRAZ03DGHF2a numeric vector
H35JRAZ03DHRCRa numeric vector
H35JRAZ03DIOTHa numeric vector
H35JRAZ03DJAMFa numeric vector
H35JRAZ03DJLV9a numeric vector
H35JRAZ03DJU1Va numeric vector
H35JRAZ03DKE4Ja numeric vector
H35JRAZ03DKRO9a numeric vector
H35JRAZ03DLA3Ua numeric vector
H35JRAZ03DLJW2a numeric vector
H35JRAZ03DLRGIa numeric vector
H35JRAZ03DMDRMa numeric vector
H35JRAZ03DMGA2a numeric vector
H35JRAZ03DMGAOa numeric vector
H35JRAZ03DO292a numeric vector
H35JRAZ03DOWHJa numeric vector
H35JRAZ03DP0DMa numeric vector
H35JRAZ03DQ55Sa numeric vector
H35JRAZ03DQK7Fa numeric vector
H35JRAZ03DR9O9a numeric vector
H35JRAZ03DRJ6Ea numeric vector
H35JRAZ03DSA3Ea numeric vector
H35JRAZ03DSJQAa numeric vector
H35JRAZ03DSR5La numeric vector
Source
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
MCMC.OTU documentation built on May 1, 2019, 10:55 p.m.
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Description Usage Format Source References
Description
Symbiodinium sp. ITS2 OTUs from Orbicella franksi and O. faveolata corals at the Flower Garden Banks. Two banks (east and west), two coral species, five OTUs.
Usage
1 |
Format
A data frame with 58 observations on the following 156 variables.
speciesa factor with levels
faveolatafranksibanka factor with levels
eastwestsamplea factor with levels
EFAV117EFAV123EFAV128EFAV137EFAV140EFAV142EFAV143EFAV145EFAV150EFAV153EFAV154EFAV157EFAV161EFAV162EFRA101EFRA102EFRA105EFRA216EFRA218EFRA221EFRA222EFRA224EFRA231EFRA232EFRA233EFRA236EFRA82EFRA90EFRA91WFAV102WFAV103WFAV107WFAV111WFAV112WFAV188WFAV191WFAV89WFAV91WFAV94WFAV95WFAV97WFAV98WFAV99WFRA106WFRA107WFRA112WFRA114WFRA115WFRA116WFRA117WFRA198WFRA199WFRA200WFRA201WFRA202WFRA203WFRA205WFRA210H35JRAZ01A0C9Ja numeric vector
H35JRAZ01A0D1Ba numeric vector
H35JRAZ01A0RQOa numeric vector
H35JRAZ01A1FKLa numeric vector
H35JRAZ01A1GT3a numeric vector
H35JRAZ01A1NMHa numeric vector
H35JRAZ01A1SO3a numeric vector
H35JRAZ01A1VUDa numeric vector
H35JRAZ01A22NWa numeric vector
H35JRAZ01A2ZJKa numeric vector
H35JRAZ01A2ZYYa numeric vector
H35JRAZ01A30IEa numeric vector
H35JRAZ01A32BSa numeric vector
H35JRAZ01A3DXYa numeric vector
H35JRAZ01A3UJSa numeric vector
H35JRAZ01A4BHGa numeric vector
H35JRAZ01A4F3Oa numeric vector
H35JRAZ01A4G6Oa numeric vector
H35JRAZ01A4O8Aa numeric vector
H35JRAZ01A4U5Oa numeric vector
H35JRAZ01A5LTBa numeric vector
H35JRAZ01A5O9Ua numeric vector
H35JRAZ01A6ITEa numeric vector
H35JRAZ01A771Fa numeric vector
H35JRAZ01A7EP4a numeric vector
H35JRAZ01A7SMYa numeric vector
H35JRAZ01A8A59a numeric vector
H35JRAZ01A8X2Ya numeric vector
H35JRAZ01A93HVa numeric vector
H35JRAZ01A9TZYa numeric vector
H35JRAZ01AMZP0a numeric vector
H35JRAZ01AN7JFa numeric vector
H35JRAZ01ANHEDa numeric vector
H35JRAZ01ANUPTa numeric vector
H35JRAZ01AO7GSa numeric vector
H35JRAZ01AON2Sa numeric vector
H35JRAZ01APP5Aa numeric vector
H35JRAZ01APPG5a numeric vector
H35JRAZ01APWEHa numeric vector
H35JRAZ01APYLMa numeric vector
H35JRAZ01AQIU4a numeric vector
H35JRAZ01AR1R8a numeric vector
H35JRAZ01AR8Q4a numeric vector
H35JRAZ01ARD6Ma numeric vector
H35JRAZ01ARKYWa numeric vector
H35JRAZ01ARSTDa numeric vector
H35JRAZ01ARZ7La numeric vector
H35JRAZ01AS8ZFa numeric vector
H35JRAZ01ASV28a numeric vector
H35JRAZ01ATSK2a numeric vector
H35JRAZ01ATZCYa numeric vector
H35JRAZ01AU38Ta numeric vector
H35JRAZ01AUMOEa numeric vector
H35JRAZ01AUTH5a numeric vector
H35JRAZ01AUX8Xa numeric vector
H35JRAZ01AVB0Qa numeric vector
H35JRAZ01AVFAXa numeric vector
H35JRAZ01AVX70a numeric vector
H35JRAZ01AWGQCa numeric vector
H35JRAZ01AXA3Za numeric vector
H35JRAZ01AXGLDa numeric vector
H35JRAZ01AXVIRa numeric vector
H35JRAZ01AY2DEa numeric vector
H35JRAZ01AY6KBa numeric vector
H35JRAZ01AZFWSa numeric vector
H35JRAZ01AZTSTa numeric vector
H35JRAZ01BB9FUa numeric vector
H35JRAZ01BBITPa numeric vector
H35JRAZ01BBSV6a numeric vector
H35JRAZ01BD2HVa numeric vector
H35JRAZ01BDBD6a numeric vector
H35JRAZ01BDTVFa numeric vector
H35JRAZ01BE95Xa numeric vector
H35JRAZ01BEHEKa numeric vector
H35JRAZ01BEMYIa numeric vector
H35JRAZ01BEP0Ja numeric vector
H35JRAZ01BFNRTa numeric vector
H35JRAZ01BFVYJa numeric vector
H35JRAZ01BG87Na numeric vector
H35JRAZ01BGG1Aa numeric vector
H35JRAZ01BGN2Ja numeric vector
H35JRAZ01BGUP9a numeric vector
H35JRAZ01BH7VVa numeric vector
H35JRAZ01BIHI3a numeric vector
H35JRAZ03C08W3a numeric vector
H35JRAZ03C0K1Ka numeric vector
H35JRAZ03C141Ra numeric vector
H35JRAZ03C16B4a numeric vector
H35JRAZ03C1INYa numeric vector
H35JRAZ03C1WD2a numeric vector
H35JRAZ03C2344a numeric vector
H35JRAZ03C2919a numeric vector
H35JRAZ03C2CBIa numeric vector
H35JRAZ03C2DMJa numeric vector
H35JRAZ03C2MH3a numeric vector
H35JRAZ03C2PQYa numeric vector
H35JRAZ03C32WGa numeric vector
H35JRAZ03C3ANPa numeric vector
H35JRAZ03C5910a numeric vector
H35JRAZ03C5CKRa numeric vector
H35JRAZ03C5G30a numeric vector
H35JRAZ03C60I8a numeric vector
H35JRAZ03C6AF1a numeric vector
H35JRAZ03C6E0Wa numeric vector
H35JRAZ03C6LU3a numeric vector
H35JRAZ03C6Q3Va numeric vector
H35JRAZ03C75OMa numeric vector
H35JRAZ03C7GCEa numeric vector
H35JRAZ03C7P6Ja numeric vector
H35JRAZ03C8JJTa numeric vector
H35JRAZ03C9MVIa numeric vector
H35JRAZ03CX46Ja numeric vector
H35JRAZ03CX5BCa numeric vector
H35JRAZ03CXVYSa numeric vector
H35JRAZ03DA80Ga numeric vector
H35JRAZ03DALPNa numeric vector
H35JRAZ03DAW5Ja numeric vector
H35JRAZ03DAXEIa numeric vector
H35JRAZ03DC5UZa numeric vector
H35JRAZ03DCCVAa numeric vector
H35JRAZ03DCGCEa numeric vector
H35JRAZ03DCXOXa numeric vector
H35JRAZ03DE7WWa numeric vector
H35JRAZ03DED1Sa numeric vector
H35JRAZ03DEJ2Sa numeric vector
H35JRAZ03DF9NAa numeric vector
H35JRAZ03DFE9Wa numeric vector
H35JRAZ03DFZXIa numeric vector
H35JRAZ03DG0DKa numeric vector
H35JRAZ03DGHF2a numeric vector
H35JRAZ03DHRCRa numeric vector
H35JRAZ03DIOTHa numeric vector
H35JRAZ03DJAMFa numeric vector
H35JRAZ03DJLV9a numeric vector
H35JRAZ03DJU1Va numeric vector
H35JRAZ03DKE4Ja numeric vector
H35JRAZ03DKRO9a numeric vector
H35JRAZ03DLA3Ua numeric vector
H35JRAZ03DLJW2a numeric vector
H35JRAZ03DLRGIa numeric vector
H35JRAZ03DMDRMa numeric vector
H35JRAZ03DMGA2a numeric vector
H35JRAZ03DMGAOa numeric vector
H35JRAZ03DO292a numeric vector
H35JRAZ03DOWHJa numeric vector
H35JRAZ03DP0DMa numeric vector
H35JRAZ03DQ55Sa numeric vector
H35JRAZ03DQK7Fa numeric vector
H35JRAZ03DR9O9a numeric vector
H35JRAZ03DRJ6Ea numeric vector
H35JRAZ03DSA3Ea numeric vector
H35JRAZ03DSJQAa numeric vector
H35JRAZ03DSR5La numeric vector
Source
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
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