padjustOTU: Adjusts p-values in the OTU summary for multiple comparisons.
In MCMC.OTU: Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
Description
Usage
Arguments
Value
Author(s)
References
Description
Collects all p-values from the summary, performs FDR correction (Benjamini-Hochberg),
returns the summary with adjusted p-values.
Usage
1
padjustOTU(otu.summary, method="BH")
Arguments
otu.summary
The output of OTUsummary function.
method
Method of adjustment for multiple comparisons (see ?p.adjust)
Value
An OTU summary list (see ?OTUsummary) with adjusted p-values
Author(s)
Mikhail V. Matz, University of Texas at Austin
<matz@utexas.edu>
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
MCMC.OTU documentation built on May 1, 2019, 10:55 p.m.
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Description Usage Arguments Value Author(s) References
Description
Collects all p-values from the summary, performs FDR correction (Benjamini-Hochberg), returns the summary with adjusted p-values.
Usage
1 | padjustOTU(otu.summary, method="BH")
|
Arguments
otu.summary |
The output of OTUsummary function. |
method |
Method of adjustment for multiple comparisons (see ?p.adjust) |
Value
An OTU summary list (see ?OTUsummary) with adjusted p-values
Author(s)
Mikhail V. Matz, University of Texas at Austin <matz@utexas.edu>
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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