signifOTU: Finds differentially represented OTUs.
In MCMC.OTU: Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
Description
Usage
Arguments
Value
Author(s)
References
Description
Trawls otuWise summary tables in the data returned by OTUsummary
and returns the names of OTUs that have p-values better than
the specified cutoff.
Usage
1
signifOTU(otu.summary, p.cutoff=0.05)
Arguments
otu.summary
The output of OTUsummary function.
p.cutoff
p-value cutoff to report OTUs.
Value
A vector of significant OTUs.
Author(s)
Mikhail V. Matz, University of Texas at Austin
<matz@utexas.edu>
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
MCMC.OTU documentation built on May 1, 2019, 10:55 p.m.
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Description Usage Arguments Value Author(s) References
Description
Trawls otuWise summary tables in the data returned by OTUsummary and returns the names of OTUs that have p-values better than the specified cutoff.
Usage
1 | signifOTU(otu.summary, p.cutoff=0.05)
|
Arguments
otu.summary |
The output of OTUsummary function. |
p.cutoff |
p-value cutoff to report OTUs. |
Value
A vector of significant OTUs.
Author(s)
Mikhail V. Matz, University of Texas at Austin <matz@utexas.edu>
References
Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Monica Medina Next-generation sequencing reveals cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of Mexico. PeerJ 2014 https://peerj.com/preprints/246/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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