Nothing
'binomRDtest' <- function(x,...){UseMethod("binomRDtest")}
'binomRDtest.default' <- function(x, n, names=NULL, type="Dunnett",
cmat=NULL, method="Wald", alternative="two.sided", dist="MVN", ...)
{
aargs<-list(...)
# check x, n
k <- length(x)
if(k<2)
{stop("x, n must contain at least two elements")}
if(any(n<2))
{stop("sample size must be at least 2 in each group")}
if(length(n)!=k)
{stop("x, n must be of equal length")}
if(!is.numeric(x) | !is.numeric(n))
{stop("x, n must be numeric vectors")}
# include checks for validity of methods
# check the names
# if no names are given, available names of x are taken
# if names are specified, names of x/n are overwritten
gnames<-names
if(is.null(gnames))
{
if(is.null(names(x)))
{gnames <- names(x) <- names(n) <- as.character(1:k)}
else
{gnames <- names(n) <- names(x)}
}
else
{
if(length(gnames)!=k)
{stop("length of names does not fit to length of x,n")}
else
{names(x) <- names(n) <- as.character(gnames)}
}
# check the contrast matrix
# check the contrast matrix
if (is.null(cmat)) {
if(type=="Dunnett") {
if(is.null(aargs$base)){base<-1}
else{base<-aargs$base}
cmat <- contrMat(n=n, type=type, base=base)
}
else{cmat <- contrMat(n = n, type = type)}
}
else {
if (!is.matrix(cmat) || ncol(cmat) != k)
{stop("cmat must be a matrix with number of columns = number of groups")}
}
est <- binomest.default(x=x, n=n, names=gnames, method = method, success=aargs$success)
out <- Waldtest(estp = est$estp,
varp = est$varcor,
cmat = cmat,
alternative = alternative,
dist=dist)
out$estimate <- cmat %*% est$estimate
colnames(cmat) <- gnames
out$x <- x
out$n <- n
out$p <- est$estimate
out$success <- est$success
out$names <- gnames
out$method <- method
out$cmat <- cmat
class(out) <- "binomRDtest"
return(out)
}
'binomRDtest.table' <- function(x, type="Dunnett",
cmat=NULL, method="Wald", alternative="two.sided", dist="MVN", ...)
{
aargs<-list(...)
est<-binomest.table(x, method=method, success=aargs$success)
n<-est$n
k<-length(n)
if(any(n<2))
{stop("Sample size must be at least 2 in each group")}
gnames<-est$names
# check the contrast matrix
# check the contrast matrix
if (is.null(cmat)) {
if(type=="Dunnett") {
if(is.null(aargs$base)){base<-1}
else{base<-aargs$base}
cmat <- contrMat(n=n, type=type, base=base)
}
else{cmat <- contrMat(n = n, type = type)}
}
else {
if (!is.matrix(cmat) || ncol(cmat) != k)
{stop("cmat must be a matrix with number of columns = number of groups")}
}
out <- Waldtest(estp = est$estp,
varp = est$varcor,
cmat = cmat,
alternative = alternative,
dist=dist)
out$estimate <- cmat %*% est$estimate
colnames(cmat) <- gnames
out$x <- est$Y
out$n <- est$n
out$p <- est$estimate
out$success <- est$success
out$names <- gnames
out$method <- method
out$cmat <- cmat
class(out) <- "binomRDtest"
return(out)
}
'binomRDtest.matrix' <- function(x, type="Dunnett",
cmat=NULL, method="Wald", alternative="two.sided", dist="MVN",...)
{
mat<-as.table(x)
aargs<-list(...)
aargs$x<-mat
aargs$type<-type
aargs$cmat<-cmat
aargs$method<-method
aargs$alternative<-alternative
aargs$dist<-dist
out<-do.call("binomRDtest.table", args=aargs)
return(out)
}
'binomRDtest.formula' <- function(formula, data, type="Dunnett",
cmat=NULL, method="Wald", alternative="two.sided", dist="MVN", ...)
{
testaargs<-aargs<-list(...)
aargs$formula<-formula
aargs$data<-data
aargs$method<-method
est<-do.call("binomest.formula", args=aargs)
testaargs$x<-est$Y
testaargs$n<-est$n
testaargs$names<-est$names
testaargs$type<-type
testaargs$cmat<-cmat
testaargs$method<-method
testaargs$alternative<-alternative
testaargs$dist<-dist
testaargs$success<-est$success
out<-do.call("binomRDtest.default", args=testaargs)
return(out)
}
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