Man pages for MDplot
Visualising Molecular Dynamics Analyses
| clusters | Cluster bar plot |
| clusters_ts | Cluster timeseries plot |
| dssp | DSSP plot for secondary structure elements (proteins) |
| dssp_ts | DSSP timeseries plot for secondary structure elements... |
| hbond | Plot hydrogen bond summary |
| hbond_ts | Plot hydrogen bond timeseries |
| load_clusters | Loading cluster information |
| load_clusters_ts | Loading timeseries cluster information |
| load_dssp | Load DSSP information |
| load_dssp_ts | Load DSSP timeseries |
| load_hbond | Loading hydrogen bond data |
| load_hbond_ts | Loading hydrogen bonds timeseries |
| load_noe | Loading NOE violations |
| load_ramchandran | Load dihedral information (Ramachandran plot input) |
| load_rmsd | Loading function for 'rmsd()' |
| load_rmsf | Loading function for 'rmsf()' |
| load_TIcurve | Loading function for thermodynamic integration function... |
| load_timeseries | Loading function for 'timeseries()' |
| load_xrmsd | Loading function for 'xrmsd()' |
| MDplot_argument-class | Arguments for bash script interface |
| MDplot-internal | Internal functions for 'MDplot' |
| noe | Plot NOE violations |
| ramachandran | Ramachandran plot for two dihedral angles |
| rmsd | Root-mean-square-deviation (RMSD) plot |
| rmsd_average | Root-mean-square-deviation (RMSD) average plot |
| rmsf | Root-mean-square-fluctuation (RMSF) plot |
| TIcurve | Thermodynamic integration plot |
| timeseries | General timeseries plotting function |
| translate_aminoacids | Function to translate between canonical and GROMOS amino acid... |
| xrmsd | XRMSD plot in heatmap style |
