Man pages for MDplot
Visualising Molecular Dynamics Analyses

clustersCluster bar plot
clusters_tsCluster timeseries plot
dsspDSSP plot for secondary structure elements (proteins)
dssp_tsDSSP timeseries plot for secondary structure elements...
hbondPlot hydrogen bond summary
hbond_tsPlot hydrogen bond timeseries
load_clustersLoading cluster information
load_clusters_tsLoading timeseries cluster information
load_dsspLoad DSSP information
load_dssp_tsLoad DSSP timeseries
load_hbondLoading hydrogen bond data
load_hbond_tsLoading hydrogen bonds timeseries
load_noeLoading NOE violations
load_ramchandranLoad dihedral information (Ramachandran plot input)
load_rmsdLoading function for 'rmsd()'
load_rmsfLoading function for 'rmsf()'
load_TIcurveLoading function for thermodynamic integration function...
load_timeseriesLoading function for 'timeseries()'
load_xrmsdLoading function for 'xrmsd()'
MDplot_argument-classArguments for bash script interface
MDplot-internalInternal functions for 'MDplot'
noePlot NOE violations
ramachandranRamachandran plot for two dihedral angles
rmsdRoot-mean-square-deviation (RMSD) plot
rmsd_averageRoot-mean-square-deviation (RMSD) average plot
rmsfRoot-mean-square-fluctuation (RMSF) plot
TIcurveThermodynamic integration plot
timeseriesGeneral timeseries plotting function
translate_aminoacidsFunction to translate between canonical and GROMOS amino acid...
xrmsdXRMSD plot in heatmap style
MDplot documentation built on July 5, 2017, 1:05 a.m.