Root-mean-square-fluctuation plot

Description

Plot one (or more) rmsf files as produced by molecular dynamics packages.

Usage

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
rmsf( rmsfData,
      printLegend = TRUE,
      rmsfUnit = "nm",
      colours = NA,
      residuewise = FALSE,
      numberXLabels = 7,
      names = NA,
      range = NA,
      legendPosition = "topright",
      barePlot = FALSE,
      ... )

Arguments

rmsfData

List of (alterating) atom numbers and rmsf values, as also produced by load_rmsf() for example.

printLegend

Boolean, which triggers plotting of the legend.

rmsfUnit

Specifies, which unit the y-axis is given in.

colours

Vector of colours used for plotting.

residuewise

Boolean, specifying whether atoms or residues are plotted on the x-axis.

numberXLabels

Specifies, how many ticks are used on the x-axis.

names

Vector of the names of the trajectories.

range

Range of residues to be plotted.

legendPosition

Indicate position of legend: either "bottomright", "bottomleft", "topleft" or "topright".

barePlot

Boolean, indicating whether the plot is to be made without any additional information.

...

Additional arguments (ellipsis).

Author(s)

Christian Margreitter

Examples

1
2
3
4
5
6
## Not run: 
# two curves
rmsf( load_rmsf( c( system.file( "extdata/rmsf1_example.txt.gz", package = "MDplot" ),
                    system.file( "extdata/rmsf2_example.txt.gz", package = "MDplot" ) ) ) )

## End(Not run)