dssp_ts: DSSP timeseries plot for secondary structure elements...
In MDplot: Visualising Molecular Dynamics Analyses

Description Usage Arguments Value Author(s) Examples

Plots time-series for secondary structure motifs in the context of the widely used DSSP algorithm. The default order is: "3-Helix", "4-Helix", "5-Helix", "Bend", "Beta-Bridge", "Beta-Strand", "Turn".

dssp_ts( tsData,
         printLegend = TRUE,
         timeBoundaries = NA,
         residueBoundaries = NA,
         timeUnit = NA,
         snapshotsPerTimeInt = 1000,
         barScaleFactor = 0.25,
         barePlot = FALSE,
         ... )

`tsData`	List consisting of lists, which are composed of a `name` (string) and a `values` table (x ... snapshots, y ... residues). Can be generated by `load_dssp_ts()`.
`printLegend`	If `TRUE`, a legend is printed on the right hand side of the plot.
`timeBoundaries`	A vector of boundaries for the time in snapshots.
`residueBoundaries`	A vector of boundaries for the residues.
`timeUnit`	If set, the snapshots are transformed into the respective time (depending on parameter `snapshotsPerTime`).
`snapshotsPerTimeInt`	Number of snapshots per respective `timeUnit` (only used when `timeUnit` is set).
`barScaleFactor`	Allows to manually overwrite the height of the bars.
`barePlot`	Boolean, indicating whether the plot is to be made without any additional information.
`...`	Additional arguments (ellipsis).

This function does not return data.

Christian Margreitter

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# GROMOS (see load_dssp_ts() for other input possibilities)
dssp_ts( load_dssp_ts( system.file( "extdata/dssp_ts_example",
                                    package = "MDplot" ) ) )

Loading required package: MASS
Loading required package: RColorBrewer
Loading required package: gplots

Attaching package: 'gplots'

The following object is masked from 'package:stats':

    lowess

Loading required package: gtools