MGDrivE2
Mosquito Gene Drive Explorer 2

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MGDrivE2: Mosquito Gene Drive Explorer 2
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API

API for MGDrivE2
Mosquito Gene Drive Explorer 2

Global functions
.onAttach Source code
add_interventions Man page Source code
aggregate_female_SEI Source code
base_MQ Man page Source code
base_MUH Man page Source code
base_T_humans_epi Source code
base_T_humans_epiSEIR Source code
base_T_mosy Source code
base_T_mosy_epi Source code
base_aquatic_geno Man page Source code
base_aquatic_stage Man page Source code
base_erlang Man page Source code
base_erlang_F Man page Source code
base_events Source code
base_events_decoupled Source code
base_female_Imperial Source code
base_female_SEIR Source code
base_female_SIS Source code
base_gen Man page Source code
base_gen_FE Man page Source code
base_print_stuff Source code
base_print_stuff_decoupled_mosy Source code
base_stepFunc Source code
base_stepFunc_decoupled Source code
base_sum_F Man page Source code
base_summarize_humans Man page Source code
base_time Source code
base_time_decoupled Source code
basic_eq_life Source code
batch_migration Man page Source code
batch_migration_stage Man page Source code
calc_Ratio_Aq Source code
calc_Ratio_F Source code
calc_Ratio_M Source code
calc_move_rate Man page Source code
check_approx Source code
check_dd Source code
check_double Source code
check_move_legal Source code
check_params_SEIR Source code
check_params_life Source code
check_params_sis Source code
convert_prevalence_to_eir Man page Source code
equilibrium_Imperial_decoupled Man page Source code
equilibrium_Imperial_decoupled_human Man page Source code
equilibrium_SEI_Imperial Man page Source code
equilibrium_SEI_SEIR Man page Source code
equilibrium_SEI_SIS Man page Source code
equilibrium_SEI_decoupled_human Man page Source code
equilibrium_SEI_decoupled_mosy Man page Source code
equilibrium_lifeycle Man page Source code
fequal Source code
fn_muA Source code
generate_Imperial_human_state_labels Source code
generate_coverage_parameters Source code
get_shape Man page Source code
h_move_check Source code
human_Imperial_ODE Man page Source code
human_SIS_ODE Source code
imperial_model_param_list_create Man page Source code
m_move_check Source code
make_Q_Imperial Man page Source code
make_Q_SEI Man page Source code
make_egg_adv_haz Source code
make_egg_mort_haz Source code
make_female_eip_epi_haz Source code
make_female_inf_epi_haz Source code
make_female_inf_epi_haz_decoupled_Imperial Source code
make_female_inf_epi_haz_decoupled_SIS Source code
make_female_mort_haz Source code
make_human_birth_sis_haz Source code
make_human_death_sis_haz Source code
make_human_inf_sis_haz Source code
make_human_latent_seir_haz Source code
make_human_move_sis_haz Source code
make_human_rec_sis_haz Source code
make_larvae_adv_haz Source code
make_larvae_mort_haz_lk Source code
make_larvae_mort_haz_log Source code
make_male_mort_haz Source code
make_move_female_haz Source code
make_move_male_haz Source code
make_oviposit_haz Source code
make_pupae_2female_haz Source code
make_pupae_2male_haz Source code
make_pupae_2unmated_haz Source code
make_pupae_adv_haz Source code
make_pupae_mort_haz Source code
make_transition_egg_adv Source code
make_transition_egg_mort Source code
make_transition_female_eip_epi Source code
make_transition_female_inc_epi Source code
make_transition_female_inf_epi Source code
make_transition_female_inf_epi_decoupled Source code
make_transition_female_mort_epi Source code
make_transition_female_unmated_mate Source code
make_transition_female_unmated_mort Source code
make_transition_human_birth_E_epiSEIR Source code
make_transition_human_birth_I_epiSIS Source code
make_transition_human_birth_R_epiSEIR Source code
make_transition_human_birth_S_epiSIS Source code
make_transition_human_death_E_epiSEIR Source code
make_transition_human_death_I_epiSIS Source code
make_transition_human_death_R_epiSEIR Source code
make_transition_human_death_S_epiSIS Source code
make_transition_human_inf_epiSEIR Source code
make_transition_human_inf_epiSIS Source code
make_transition_human_latent_epiSEIR Source code
make_transition_human_rec_epiSEIR Source code
make_transition_human_rec_epiSIS Source code
make_transition_larvae_adv Source code
make_transition_larvae_mort Source code
make_transition_male_mort Source code
make_transition_move_female Source code
make_transition_move_human_epiSIS Source code
make_transition_move_male Source code
make_transition_ovi_epi Source code
make_transition_pupae_adv Source code
make_transition_pupae_emerge_f Source code
make_transition_pupae_emerge_f_epi Source code
make_transition_pupae_emerge_m Source code
make_transition_pupae_emerge_unmated Source code
make_transition_pupae_mort Source code
make_unmated_2female_haz Source code
modify_adult_mortality Source code
modify_egg_laying Source code
modify_feeding_rate Source code
movement_prob2rate Man page Source code
mu_ts Man page
normalize Source code
set_populations Source code
set_populations_Imperial Source code
sim_trajectory_CSV Man page Source code
sim_trajectory_CSV_decoupled Man page Source code
sim_trajectory_R Man page Source code
sim_trajectory_R_decoupled Man page Source code
sim_trajectory_base_CSV Man page Source code
sim_trajectory_base_CSV_decoupled Man page Source code
sim_trajectory_base_R Man page Source code
sim_trajectory_base_R_decoupled_Imperial Man page Source code
sim_trajectory_base_R_decoupled_SIS Man page Source code
solve_muAqua Man page Source code
split_aggregate_CSV Man page Source code
split_aggregate_CSV_decoupled Man page Source code
spn_P_both_epiSEIR Source code
spn_P_both_epiSIS Source code
spn_P_epiSEIR_network Man page Source code
spn_P_epiSEIR_node Man page Source code
spn_P_epiSIS_network Man page Source code
spn_P_epiSIS_node Man page Source code
spn_P_epi_decoupled_node Man page Source code
spn_P_humans_epiSEIR Source code
spn_P_humans_epiSIS Source code
spn_P_lifecycle_network Man page Source code
spn_P_lifecycle_node Man page Source code
spn_P_mosy_epi Source code
spn_P_mosy_lifecycle Source code
spn_Post Man page Source code
spn_Pre Man page Source code
spn_S Man page Source code
spn_T_both_epi Source code
spn_T_both_epiSEIR Source code
spn_T_both_epi_decoupled Source code
spn_T_epiSEIR_network Man page Source code
spn_T_epiSEIR_node Man page Source code
spn_T_epiSIS_network Man page Source code
spn_T_epiSIS_node Man page Source code
spn_T_epi_decoupled_node Man page Source code
spn_T_humans_epi Source code
spn_T_humans_epiSEIR Source code
spn_T_lifecycle_network Man page Source code
spn_T_lifecycle_node Man page Source code
spn_T_mosy_epi Source code
spn_T_mosy_lifecycle Source code
spn_T_move_epi Source code
spn_hazards Man page Source code
spn_hazards_decoupled Man page Source code
stay_prob2rate Source code
step_CLE Man page Source code
step_DM Man page Source code
step_ODE Man page Source code
step_ODE_decoupled Man page Source code
step_PTS Man page Source code
step_PTS_decoupled Man page Source code
summarize_eggs_geno Man page Source code
summarize_eggs_stage Man page Source code
summarize_females Man page Source code
summarize_females_epi Man page Source code
summarize_humans_epiImperial Man page Source code
summarize_humans_epiSEIR Man page Source code
summarize_humans_epiSIS Man page Source code
summarize_larvae_geno Man page Source code
summarize_larvae_stage Man page Source code
summarize_males Man page Source code
summarize_pupae_geno Man page Source code
summarize_pupae_stage Man page Source code
summarize_stats_CSV Man page Source code
summarize_stats_CSV_decoupled Man page Source code
track_hinf Man page Source code
MGDrivE2 documentation built on Sept. 14, 2025, 5:09 p.m.

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