Files in MIC
Analysis of Antimicrobial Minimum Inhibitory Concentration Data
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/sysdata.rda
R/patric.R
R/kmer_batch.R
R/data.R
R/cv.R
R/data_converters.R
R/MIC-package.R
R/meta_data.R
src/RcppExports.cpp
src/kmers.cpp
inst/scripts/genomes_to_kmers.R
inst/scripts/pull_PATRIC_genomes.R
build/partial.rdb
tests/testthat.R
tests/testthat/test-meta_data.R
tests/testthat/test-kmer_batch.R
tests/testthat/test-data_converters.R
tests/testthat/test-patric.R
tests/testthat/test-cv.R
tests/testthat/test-kmers.R
tests/testthat/fixtures/test_patric_db.txt
tests/testthat/fixtures/genomes_libsvm/002.txt
tests/testthat/fixtures/genomes_libsvm/004.txt
tests/testthat/fixtures/genomes_libsvm/001.txt
tests/testthat/fixtures/genomes_libsvm/003.txt
tests/testthat/fixtures/genomes/002.fna
tests/testthat/fixtures/genomes/001.fna
tests/testthat/fixtures/genomes/004.fna
tests/testthat/fixtures/genomes/003.fna
tests/testthat/fixtures/genomes/005.fna
tests/testthat/fixtures/genomes/006.fna
data/ecoffs.rda
data/example_mics.rda
man/clean_raw_mic.Rd
man/squeezed_mers.Rd
man/essential_agreement.Rd
man/compare_mic.Rd
man/combined_file_system.Rd
man/compare_sir.Rd
man/mic_range.Rd
man/load_patric_db.Rd
man/xgb.cv.lowmem.Rd
man/qc_on_target.Rd
man/unsqueezed_mers.Rd
man/reverse_complement.Rd
man/plot.mic_validation.Rd
man/fill_dilution_levels.Rd
man/force_mic.Rd
man/summary.mic_validation.Rd
man/bias.Rd
man/standardise_mic.Rd
man/unsqueezed_index_to_str.Rd
man/train_test_filesystem.Rd
man/qc_in_range.Rd
man/download_patric_db.Rd
man/get_mic.Rd
man/move_files.Rd
man/ecoffs.Rd
man/example_mics.Rd
man/mic_r_breakpoint.Rd
man/mic_uncensor.Rd
man/split_and_combine_files.Rd
man/mic_s_breakpoint.Rd
man/squeezed_index_to_str.Rd
man/genome_to_libsvm.Rd
man/genomes_to_kmer_libsvm.Rd
man/replace_multiple_slashes.Rd
man/tidy_patric_meta_data.Rd
man/pull_PATRIC_genomes.Rd
man/kmers.Rd
man/MIC-package.Rd
man/print.mic_validation_summary.Rd
man/mic_censor.Rd
man/print.mic_validation.Rd
man/table.Rd
man/figures/lifecycle-stable.svg
man/figures/README-unnamed-chunk-8-1.png
man/figures/lifecycle-superseded.svg
man/figures/README-fig-val-ea-1.png
man/figures/README-unnamed-chunk-9-1.png
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-deprecated.svg
