MOJOV: Mojo Variants: Rare Variants analysis

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A package for analysis between rare variants and quantitative traits by CMC (the combined multivariate and collapsing method).

Author
Ke-Hao Wu
Date of publication
2013-02-28 16:37:22
Maintainer
Ke-Hao Wu <kehao.wu@gmail.com>
License
GPL (>= 2)
Version
1.0.1

View on CRAN

Man pages

geno
A data file contains genotype.
MOJOV.analysis
Analysis between rare variants and quantatitive traits using...
MOJOV-class
Class '"MOJOV"'
MOJOV.export
Export test result from a MOJOV class to file.
MOJOV.genoMatrix
A internal function. It generates a genotype matrix.
MOJOV.genoVector
A internal function. It makes genotype matrix become a...
MOJOV.linearRegAnalysis
A internal function. Linear regression analysis between rare...
MOJOV-package
Mojo Variants: Rare Variants analysis tool.
MOJOV.phenotype
Ajusting phenotype data for covariates.
MOJOV.read
Reading genotype and phenotype and generating a "MOJOV"...
MOJOV.regTermTest
A internal function. A test from survey package.
MOJOV.saws
A test from saws package.
MOJOV.simulation
Simulation for CMC.
MOJOV.summary
Exporting summary information for genotype.
MOJOV.Summary-class
Class '"MOJOV.Summary"'
MOJOV.wald.test
A test from aod package.
MOJOV.weight
Providing a weight vector.
phen
A data file contains phenotype.

Files in this package

MOJOV
MOJOV/MD5
MOJOV/DESCRIPTION
MOJOV/NAMESPACE
MOJOV/R
MOJOV/R/MOJOV.R
MOJOV/man
MOJOV/man/MOJOV.weight.Rd
MOJOV/man/phen.Rd
MOJOV/man/MOJOV.export.Rd
MOJOV/man/MOJOV.linearRegAnalysis.Rd
MOJOV/man/MOJOV-package.Rd
MOJOV/man/MOJOV.regTermTest.Rd
MOJOV/man/MOJOV.saws.Rd
MOJOV/man/MOJOV.Summary-class.Rd
MOJOV/man/MOJOV-class.Rd
MOJOV/man/MOJOV.summary.Rd
MOJOV/man/MOJOV.read.Rd
MOJOV/man/MOJOV.analysis.Rd
MOJOV/man/MOJOV.genoVector.Rd
MOJOV/man/MOJOV.wald.test.Rd
MOJOV/man/geno.Rd
MOJOV/man/MOJOV.phenotype.Rd
MOJOV/man/MOJOV.genoMatrix.Rd
MOJOV/man/MOJOV.simulation.Rd
MOJOV/data
MOJOV/data/phen.csv.gz
MOJOV/data/geno.csv.gz