MOJOV: Mojo Variants: Rare Variants analysis
Version 1.0.1

A package for analysis between rare variants and quantitative traits by CMC (the combined multivariate and collapsing method).

AuthorKe-Hao Wu
Date of publication2013-02-28 16:37:22
MaintainerKe-Hao Wu <kehao.wu@gmail.com>
LicenseGPL (>= 2)
Version1.0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("MOJOV")

Getting started

Package overview

Popular man pages

geno: A data file contains genotype.
MOJOV-class: Class '"MOJOV"'
MOJOV.export: Export test result from a MOJOV class to file.
MOJOV.genoVector: A internal function. It makes genotype matrix become a...
MOJOV.saws: A test from saws package.
MOJOV.Summary-class: Class '"MOJOV.Summary"'
phen: A data file contains phenotype.
See all...

All man pages Function index File listing

Man pages

geno: A data file contains genotype.
MOJOV.analysis: Analysis between rare variants and quantatitive traits using...
MOJOV-class: Class '"MOJOV"'
MOJOV.export: Export test result from a MOJOV class to file.
MOJOV.genoMatrix: A internal function. It generates a genotype matrix.
MOJOV.genoVector: A internal function. It makes genotype matrix become a...
MOJOV.linearRegAnalysis: A internal function. Linear regression analysis between rare...
MOJOV-package: Mojo Variants: Rare Variants analysis tool.
MOJOV.phenotype: Ajusting phenotype data for covariates.
MOJOV.read: Reading genotype and phenotype and generating a "MOJOV"...
MOJOV.regTermTest: A internal function. A test from survey package.
MOJOV.saws: A test from saws package.
MOJOV.simulation: Simulation for CMC.
MOJOV.summary: Exporting summary information for genotype.
MOJOV.Summary-class: Class '"MOJOV.Summary"'
MOJOV.wald.test: A test from aod package.
MOJOV.weight: Providing a weight vector.
phen: A data file contains phenotype.

Functions

MOJOV Man page
MOJOV-class Man page
MOJOV-package Man page
MOJOV.Summary-class Man page
MOJOV.analysis Man page Source code
MOJOV.export Man page Source code
MOJOV.genoMatrix Man page Source code
MOJOV.genoVector Man page Source code
MOJOV.linearRegAnalysis Man page Source code
MOJOV.phenotype Man page Source code
MOJOV.read Man page Source code
MOJOV.regTermTest Man page Source code
MOJOV.saws Man page Source code
MOJOV.simulation Man page Source code
MOJOV.summary Man page Source code
MOJOV.wald.test Man page Source code
MOJOV.weight Man page Source code
adjustAuto,MOJOV-method Man page
adjustData,MOJOV-method Man page
adjustGender,MOJOV-method Man page
adjustPower,MOJOV-method Man page
adjustPowerPvalue,MOJOV-method Man page
adjustPvalue,MOJOV-method Man page
adjustTerms,MOJOV-method Man page
analyCode,MOJOV-method Man page
analyWeighted,MOJOV-method Man page
geno Man page
genoChr,MOJOV-method Man page
genoFile,MOJOV-method Man page
genoGene,MOJOV-method Man page
genoH,MOJOV-method Man page
genoIID,MOJOV-method Man page
genoPosi,MOJOV-method Man page
genoVariant,MOJOV-method Man page
phen Man page
phenoAge,MOJOV-method Man page
phenoColumn,MOJOV-method Man page
phenoData,MOJOV-method Man page
phenoFile,MOJOV-method Man page
phenoGender,MOJOV-method Man page
phenoHeight,MOJOV-method Man page
phenoIID,MOJOV-method Man page
phenoIndNum,MOJOV-method Man page
phenoLabel,MOJOV-method Man page
phenoWeight,MOJOV-method Man page
regionChr,MOJOV-method Man page
regionFile,MOJOV-method Man page
regionGene,MOJOV-method Man page
regionPStart,MOJOV-method Man page
regionPStop,MOJOV-method Man page
regionType,MOJOV-method Man page
resultMethod,MOJOV-method Man page
resultPvalue,MOJOV-method Man page
show,MOJOV-method Man page
show,MOJOV.Summary-method Man page
summary.freq Source code
varFreq,MOJOV-method Man page
varMAF,MOJOV-method Man page
varRare,MOJOV-method Man page
varTot,MOJOV-method Man page

Files

MD5
DESCRIPTION
NAMESPACE
R
R/MOJOV.R
man
man/MOJOV.weight.Rd
man/phen.Rd
man/MOJOV.export.Rd
man/MOJOV.linearRegAnalysis.Rd
man/MOJOV-package.Rd
man/MOJOV.regTermTest.Rd
man/MOJOV.saws.Rd
man/MOJOV.Summary-class.Rd
man/MOJOV-class.Rd
man/MOJOV.summary.Rd
man/MOJOV.read.Rd
man/MOJOV.analysis.Rd
man/MOJOV.genoVector.Rd
man/MOJOV.wald.test.Rd
man/geno.Rd
man/MOJOV.phenotype.Rd
man/MOJOV.genoMatrix.Rd
man/MOJOV.simulation.Rd
data
data/phen.csv.gz
data/geno.csv.gz
MOJOV documentation built on May 20, 2017, 12:54 a.m.

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