MOJOV.read: Reading genotype and phenotype and generating a "MOJOV"...

In MOJOV: Mojo Variants: Rare Variants analysis

Description

Reading genotype and phenotype and generating a "MOJOV" class.

And it can read another phenotype for a existing "MOJOV" class.

Usage

MOJOV.read(x = NULL, genofile = NULL, phenofile = NULL,
      indelfile = NULL, header = T, column = 1, ...)

Arguments

x	If x is null, it will need both genotype and phenotype file, or x should be a "MOJOV" class and it only need phenotype file, see detials.
genofile	Specify genotype file name.
phenofile	Specify phenotype file name.
indelfile	Specify insert and delete variants file name, it is optional.
header	Specify whether the file contains a head line.
column	Which column phenotype will be read. This column is not include the previous 5 columns. The default value is 1.
...	You can specify other arguments here.

Author(s)

Ke-Hao Wu

See Also

MOJOV-class

Examples

  #Reading both genotype and phenotype files.
  file1<-system.file("data","geno.csv.gz",package="MOJOV")
  file2<-system.file("data","phen.csv.gz",package="MOJOV")
  x<-MOJOV.read(genofile=file1,phenofile=file2)
  
  #Reading phenotype and switch different phenotype column to analysis.
  x  #x is a existing "MOJOV" class. The phenotype is R_13_AREA.
  x<-MOJOV.read(x=x,phenofile=file2,column=2) #The phenotype is _13_BMD.

MOJOV documentation built on May 2, 2019, 11:42 a.m.