MOJOV-class: Class '"MOJOV"'
In MOJOV: Mojo Variants: Rare Variants analysis

Description Slots Author(s) See Also

A class for MOJOV package, and you can create it by call new("MOJOV",...)

genoFile: "character" Genotype file name.
genoIID: "character" Individual ID in genotype file.
genoChr: "character" Chromosome name in genotype file.
genoPosi: "numeric" Physical position in genotype file.
genoVariant: "character" Variants labels in genotype file.
genoH: "numeric" Genotype code in genotype file. 1 stands for heterozygote, 0 stands for no variant copy, 2 stands for two variant copies.
genoGene: "character" Gene labels in genotype file.
phenoFile: "character" Phenotype file name.
phenoIID: "character" Individuals ID in phenotype.
phenoGender: "numeric" Gender information.
phenoAge: "numeric" Age for all individuals.
phenoHeight: "numeric" Height for all individuals.
phenoWeight: "numeric" Weight for all individuals.
phenoLabel: "character" Phenotype name.
phenoData: "numeric" Phenotype data.
phenoColumn: "numeric" Indicating which column will be read.
phenoIndNum: "numeric" Number of individuals.
adjustAuto: "logical" An arguments for MOJOV.phenotype.
adjustData: "numeric" Phenotype data after adjusted.
adjustGender: "logical" An arguments for MOJOV.phenotype.
adjustPower: "numeric" The exponent for adjust.
adjustPowerPvalue: "numeric" The result of shapiro test.
adjustTerms: "character" Which term has been adjusted.
adjustPvalue: "numeric" The p value for adjust.
varMAF: "numeric" Minor allele frequency.
varFreq: "numeric" Frequency for all variants.
varTot: "character" ~~
varRare: "character" ~~
regionFile: "character" File name for ROI file.
regionType: "character" Indicating the ROI type.
regionChr: "character" Chromosome infomation in ROI file.
regionPStart: "numeric" Physical position (start) in ROI file.
regionPStop: "numeric" Physical position (stop) in ROI file.
regionGene: "character" Gene information in ROI file.
analyCode: "character" Coding method.
analyWeighted: "character" Weighted method.
resultMethod: "character" Test method.
resultPvalue: "numeric" P value from linear regression analysis.