MOJOV.genoVector: A internal function. It makes genotype matrix become a...
In MOJOV: Mojo Variants: Rare Variants analysis

Description Usage Arguments Details Value Author(s) References See Also Examples

It makes genotype matrix become a genotype vector using different coding methods.

1 2	MOJOV.genoVector(x = NULL, y = NULL, codeMethod = c("Proportion", "Indicator", "ChuanhuaXin"), weightMethod = c("ChuanhuaXin"))

`x`	A matrix for genotype, and it can be from MOJOV.matrix.
`y`	A vector for phenotype, it's length should be equal to the rows of x.
`codeMethod`	Specify the coding method for CMC, It can be "Indicator", "Proportion" and "ChuanhuaXin". And the default value is "Proportion".
`weightMethod`	Specify the weighted method for CMC, It only provide "ChuanhuaXin" method in this version.

See MOJOV.analysis

It will return a vector of genotype processed by different coding methods.

Ke-Hao WU

Morris AP, Zeggini E. An evaluation of statistical approaches to rare variant analysis in genetic association studies. Genet Epidemiol. 2009;34:188-193.

Dering C, Pugh E, Ziegler A. Statistical analysis of rare sequence variants: an overview of collapsing methods. Genet Epidemiol. 2011;35(Suppl 8):12-17.

MOJOV.analysis MOJOV.genoMatrix MOJOV.weight

#Generating individuals ID for genotype file at random.
genoIID<-paste("ID",floor(runif(2000,1,101)),sep="")
#Generating variants labels for genotype file at random.
genoVariant<-paste("rs",floor(runif(2000,223,250)),sep="")
#Generating genotype code for genotype file at random.
genoH<-floor(runif(2000,1,3))
#Generating individuals ID for phenotype file.
phenoIID<-paste("ID",1:100,sep="")
#Generating genotype matrix.
x<-MOJOV.genoMatrix(genoIID=genoIID,genoVariant=genoVariant,genoH=genoH,
         phenoIID=phenoIID)
#Generating genotype vector.
xVector<-MOJOV.genoVector(x=x,y=phenoIID)