API for MPAgenomics
Multi-Patient Analysis of Genomic Markers

Global functions
CGHSEGaroma Source code
CGHcall Source code
CNAobjectToCGHcallObject Man page Source code
ExpandCGHcall Source code
HDlarsbivariate Man page Source code
HDlarsbivariate2 Source code
Lmethod Source code
MPAgenomics Man page
MPAgenomics-package Man page
MPAgenomics-package, Man page
MakeData Source code
PELT Source code
PELTaroma Source code
SNPselectionCNsignal Source code
SNPselectionFracBsignal Source code
SignalNormalization Man page Source code
SingleStudyPlot Source code
addChipType Man page Source code
addData Man page Source code
alpha0all Source code
alphafun Source code
assignNames Source code
bestSegmentation Source code
bestSegmentationBM Source code
callingObject Man page Source code
callingProcess Man page Source code
cghseg Source code
checkChipType Source code
cnSegCallingProcess Man page Source code
convertChromosomeToArm Source code
copyChipFiles Source code
copyDataFiles Source code
countcl Source code
createArchitecture Man page Source code
createEmptyArchitecture Man page Source code
filterSeg Man page Source code
findGender Source code
findPlateau Man page Source code
getCentromere Source code
getComplementaryFile Source code
getCopyNumberSignal Man page Source code
getCopyNumberSignalPairedStudy Source code
getCopyNumberSignalSingleStudy Source code
getFracBSignal Man page Source code
getFracBSignalPairedStudy Source code
getFracBSignalSingleStudy Source code
getGenotypeCalls Man page Source code
getId Source code
getListOfFiles Man page Source code
getNormalTumorMatrix Source code
getStatus Source code
getSymFracBSignal Man page Source code
is.wholenumber Source code
knee Source code
markerSelection Man page Source code
minusEloglikreg Source code
modelSelection Source code
naiveGenotypeCalls Source code
posteriorp Source code
postsegnormalize Source code
reallik4 Source code
reallikk4 Source code
segFracBSignal Man page Source code
segmentation Man page Source code
segmentationAroma Man page Source code
segmentationObject Man page Source code
signalPreProcess Man page Source code
sumreg Source code
sumsqreg Source code
symmetrizeFracB Man page Source code
totallik Source code
totallik2 Source code
tumorboost Source code
tumorboostPlot Source code
variableSelection Man page Source code
varproffun Source code
varregtimescount Source code
xgivenknotrunc Source code
MPAgenomics documentation built on May 29, 2017, 9:34 p.m.