callingObject: Create the list of parameters for callingProcess function

In MPAgenomics: Multi-Patient Analysis of Genomic Markers

Description

create the list of parameters for callingProcess function

Usage

callingObject(
  copynumber,
  segmented,
  chromosome,
  position,
  featureNames,
  sampleNames
)

Arguments

copynumber	A matrix containing the copy-number signal. Each column is a different patient.
segmented	A matrix containing the segmented copy-number signal. Matrix of the same size as copynumber.
chromosome	Chromosome associated with the copy-number signal.
position	Position of the signal.
featureNames	Names of the probes (not necessary).
sampleNames	Name of the sample (not necessary).

Value

a list in the right format for callingProcess function

Author(s)

Quentin Grimonprez

MPAgenomics documentation built on March 30, 2021, 5:13 p.m.