Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/createAromaArchitecture.R
Create the architecture required by aroma.* packages and copy files into created folders.
1 2 3 4 5 6 7 8 9 | createArchitecture(
dataSetName,
chipType,
dataSetPath,
chipFilesPath,
path = ".",
verbose = FALSE,
tags = NULL
)
|
dataSetName |
The name of the data-set folder to create |
chipType |
The name of the used chip |
dataSetPath |
Path to the folder containing the data CEL files |
chipFilesPath |
Path to the folder containing the chip files |
path |
Path where the architecture should be created (default=".") |
verbose |
Print information during the process (default=FALSE) |
tags |
Common tag which appears in the different file names (cdf, ugp, ufl) of the chip. For no tag, use tags=NULL (default = NULL). See details for more information. |
All the cdf chip file names must follow the following rule : <chipType>,<Tags>.cdf
Multiples tags must be separated by a comma. If there is no tag, the pattern is <chipType>.cdf
No return value, called for side effects.
Quentin Grimonprez
copyChipFiles, copyDataFiles, createAromaArchitecture
1 2 3 4 5 | ## Not run:
#DO NOT EXECUTE before reading the vignette
createArchitecture("test1","GenomeWideSNP_6","./celPATH","./chipPATH",path=".",TRUE,"Full")
## End(Not run)
|
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