MPAgenomics-package: Multi-Patient Analysis of Genomic Markers
In MPAgenomics: Multi-Patient Analysis of Genomic Markers
Description
Details
Author(s)
Examples
Description
This package provides functions to preprocess and analyze genomic data.
The package was initially developped to select genomic markers associated with a given phenotype when several samples are available.
In this context, markers refer to SNPs or copy number variations which are designed on the arrays.
The package also enables to preprocess all samples individually in order to keep maximum information from the original signals and improve the multi-patient analysis. In particular, this is useful to keep quantitative data for SNPs rather than usual genotype calls (AA, AB or BB) when these states are not relevant (eg in cancer studies where the number of copies differs from two copies).
Details
Package: MPAgenomics
Type: Package
Version: 1.1.8
Date: 2020-01-16
License: GPL (>=2)
Author(s)
Quentin Grimonprez with contributions from Guillemette Marot and Samuel Blanck
Maintainer: Samuel Blanck <samuel.blanck@univ-lille.fr>
Examples
1
2
3
#see the vignette for detailed examples
vignette("MPAgenomics")
MPAgenomics documentation built on March 30, 2021, 5:13 p.m.
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Description Details Author(s) Examples
Description
This package provides functions to preprocess and analyze genomic data. The package was initially developped to select genomic markers associated with a given phenotype when several samples are available. In this context, markers refer to SNPs or copy number variations which are designed on the arrays.
The package also enables to preprocess all samples individually in order to keep maximum information from the original signals and improve the multi-patient analysis. In particular, this is useful to keep quantitative data for SNPs rather than usual genotype calls (AA, AB or BB) when these states are not relevant (eg in cancer studies where the number of copies differs from two copies).
Details
| Package: | MPAgenomics |
| Type: | Package |
| Version: | 1.1.8 |
| Date: | 2020-01-16 |
| License: | GPL (>=2) |
Author(s)
Quentin Grimonprez with contributions from Guillemette Marot and Samuel Blanck
Maintainer: Samuel Blanck <samuel.blanck@univ-lille.fr>
Examples
1 2 3 | #see the vignette for detailed examples
vignette("MPAgenomics")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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