MareyMap: Estimation of Meiotic Recombination Rates Using Marey Maps

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Local recombination rates are graphically estimated across a genome using Marey maps.

Author
Aurélie Siberchicot, Clément Rezvoy, Delphine Charif, Laurent Gueguen and Gabriel Marais
Date of publication
2016-11-15 12:08:22
Maintainer
Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
License
GPL (>= 2)
Version
1.3.3
URLs

View on CRAN

Man pages

Arabidopsis_thaliana
The marey map for the species Arabidopsis thaliana
argList-methods
Methods for function argList in package 'MareyMap'
Caenorhabditis_elegans
The marey map for the species Caenorhabditis_elegans
color-methods
Accessors for slot color in package 'MareyMap'
createOrder-methods
createOrder
Drosophila_melanogaster
The marey map for the species Drosophila melanogaster
geneticDistances-methods
Accessors for slot geneticDistances
getInterList-methods
returns a list of interpolation methods.
Homo_sapiens
The marey map for the species Homo sapiens (female, male and...
interpolate-methods
interpolate
Interpolation-class
Class "Interpolation"
interpolation-methods
set or returns an interpolation.
InterpolationParam-class
Class "InterpolationParam"
InterpolationParam-methods
Methods for Function InterpolationParam in Package 'MareyMap'
interpolations-methods
accessors for slot interpolations
MapCollection-class
Class "MapCollection"
MapCollection-methods
Constructor for class MapCollection
mapName-methods
accessors for the slot mapName
mapNames-methods
mapNames
MareyMap-class
Class "MareyMap"
MareyMap-methods
Constructor for object of the class MareyMap.
markerNames-methods
Accessors for the class markerNames.
markerValidity-methods
accessors for slot markerValidity
MMLoess-class
Class "MMLoess". Interpolation method plug-in for MareyMap
MMSlidingWindow-class
Class "MMSlidingWindow" Interpolation method plug-in for...
MMSpline3-class
Class "MMSpline3" Interpolation using cubic splines
name-Methods
Accessor for slot name.
paramDefault-methods
Accessors for slot paramDefault
paramDesc-methods
Accessors for the slot paramDesc
paramFun-methods
accessors for the slot paramFun
paramMax-methods
Accessors for the slot paramMax.
paramMin-methods
Accessors for slot paramMin.
paramName-methods
Accessors for the slot paramName.
paramType-methods
Accessors for the slot paramType.
paramValues-methods
Accessor for the slot paramValues.
persistent-methods
Accessors for the slot persistent.
physicalPositions-methods
Accessors for the slot physicalPositions
plotMarkers-methods
plotMarkers
plotModel-methods
plotModel
plotModels-methods
plotModels
plotRate-methods
plotRate
plotRates-methods
plotRates
query-methods
Methods for Function query
rates-methods
Accessors for the slot rates
registerInterpolationMethod-methods
registerInterpolationMethods
removeMarker-methods
removeMarker
SpeciesMaps-class
Class "MapSet"
SpeciesMaps-methods
Constructor for the class MapSet.
speciesName-methods
Accessors for the slot setName.
speciesNames-methods
setNames
startMareyMapGUI-methods
MareyMapGUI launcher
textFile-methods
textFile
userParam-methods
userParam
validPositions-methods
validPositions
visible-methods
Accessors for the slot visible

Files in this package

MareyMap
MareyMap/COPYING
MareyMap/inst
MareyMap/inst/stock_delete.gif
MareyMap/inst/gnome-settings.gif
MareyMap/inst/gtk-add.gif
MareyMap/inst/license.txt
MareyMap/inst/stock_color.gif
MareyMap/inst/stock_save.gif
MareyMap/inst/stock_help-agent.gif
MareyMap/inst/about.txt
MareyMap/inst/stock_show-all.gif
MareyMap/inst/doc
MareyMap/inst/doc/vignette.Rnw
MareyMap/inst/doc/vignette.pdf
MareyMap/NAMESPACE
MareyMap/data
MareyMap/data/Arabidopsis_thaliana.rda
MareyMap/data/Homo_sapiens_female.rda
MareyMap/data/Caenorhabditis_elegans.rda
MareyMap/data/Homo_sapiens_male.rda
MareyMap/data/Homo_sapiens_mean.rda
MareyMap/data/Drosophila_melanogaster.rda
MareyMap/R
MareyMap/R/AllClasses.R
MareyMap/R/PlotArea.R
MareyMap/R/Registry.R
MareyMap/R/MarkerInfo.R
MareyMap/R/MareyMap.Methods.R
MareyMap/R/MapSet.Methods.R
MareyMap/R/mmspline3.R
MareyMap/R/MenuBar.R
MareyMap/R/startMareyMapGUI.R
MareyMap/R/InterpolationParam.Methods.R
MareyMap/R/mmloess.R
MareyMap/R/InterpolationList.R
MareyMap/R/mmslidingwindow.R
MareyMap/R/Interpolation.Methods.R
MareyMap/R/AllGeneric.R
MareyMap/R/MapCollection.Methods.R
MareyMap/R/LocalRateQuery.R
MareyMap/R/MapList.R
MareyMap/vignettes
MareyMap/vignettes/vignette.Rnw
MareyMap/vignettes/vignette-concordance.tex
MareyMap/vignettes/severalqueries.png
MareyMap/vignettes/stock_save.png
MareyMap/vignettes/listmethods.png
MareyMap/vignettes/loessmethod.png
MareyMap/vignettes/gnome-settings.png
MareyMap/vignettes/opendata.png
MareyMap/vignettes/test_query.txt
MareyMap/vignettes/slidingwindowmethod.png
MareyMap/vignettes/gtk-add.png
MareyMap/vignettes/splinemethod.png
MareyMap/vignettes/stock_delete.png
MareyMap/vignettes/start.png
MareyMap/vignettes/interactivequery.png
MareyMap/vignettes/stock_show-all.png
MareyMap/MD5
MareyMap/build
MareyMap/build/vignette.rds
MareyMap/DESCRIPTION
MareyMap/man
MareyMap/man/registerInterpolationMethod-methods.Rd
MareyMap/man/paramDefault-methods.Rd
MareyMap/man/paramMax-methods.Rd
MareyMap/man/rates-methods.Rd
MareyMap/man/paramName-methods.Rd
MareyMap/man/interpolation-methods.Rd
MareyMap/man/plotModel-methods.Rd
MareyMap/man/mapName-methods.Rd
MareyMap/man/persistent-methods.Rd
MareyMap/man/InterpolationParam-class.Rd
MareyMap/man/plotRates-methods.Rd
MareyMap/man/MareyMap-class.Rd
MareyMap/man/plotMarkers-methods.Rd
MareyMap/man/createOrder-methods.Rd
MareyMap/man/Homo_sapiens.Rd
MareyMap/man/Drosophila_melanogaster.Rd
MareyMap/man/argList-methods.Rd
MareyMap/man/plotModels-methods.Rd
MareyMap/man/speciesName-methods.Rd
MareyMap/man/MapCollection-class.Rd
MareyMap/man/speciesNames-methods.Rd
MareyMap/man/markerValidity-methods.Rd
MareyMap/man/mapNames-methods.Rd
MareyMap/man/SpeciesMaps-methods.Rd
MareyMap/man/Interpolation-class.Rd
MareyMap/man/validPositions-methods.Rd
MareyMap/man/interpolate-methods.Rd
MareyMap/man/physicalPositions-methods.Rd
MareyMap/man/paramDesc-methods.Rd
MareyMap/man/InterpolationParam-methods.Rd
MareyMap/man/Arabidopsis_thaliana.Rd
MareyMap/man/getInterList-methods.Rd
MareyMap/man/paramMin-methods.Rd
MareyMap/man/MMSlidingWindow-class.Rd
MareyMap/man/SpeciesMaps-class.Rd
MareyMap/man/query-methods.Rd
MareyMap/man/Caenorhabditis_elegans.Rd
MareyMap/man/startMareyMapGUI-methods.Rd
MareyMap/man/markerNames-methods.Rd
MareyMap/man/paramValues-methods.Rd
MareyMap/man/visible-methods.Rd
MareyMap/man/MareyMap-methods.Rd
MareyMap/man/interpolations-methods.Rd
MareyMap/man/userParam-methods.Rd
MareyMap/man/MapCollection-methods.Rd
MareyMap/man/name-Methods.Rd
MareyMap/man/color-methods.Rd
MareyMap/man/plotRate-methods.Rd
MareyMap/man/textFile-methods.Rd
MareyMap/man/geneticDistances-methods.Rd
MareyMap/man/paramType-methods.Rd
MareyMap/man/removeMarker-methods.Rd
MareyMap/man/MMSpline3-class.Rd
MareyMap/man/MMLoess-class.Rd
MareyMap/man/paramFun-methods.Rd