MareyMap: Estimation of Meiotic Recombination Rates Using Marey Maps

Local recombination rates are graphically estimated across a genome using Marey maps.

AuthorAurélie Siberchicot, Clément Rezvoy, Delphine Charif, Laurent Gueguen and Gabriel Marais
Date of publication2016-11-15 12:08:22
MaintainerAurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
LicenseGPL (>= 2)
Version1.3.3
https://lbbe.univ-lyon1.fr/-MareyMap-.html ; http://lbbe-shiny.univ-lyon1.fr/MareyMapOnline/

View on CRAN

Man pages

Arabidopsis_thaliana: The marey map for the species Arabidopsis thaliana

argList-methods: Methods for function argList in package 'MareyMap'

Caenorhabditis_elegans: The marey map for the species Caenorhabditis_elegans

color-methods: Accessors for slot color in package 'MareyMap'

createOrder-methods: createOrder

Drosophila_melanogaster: The marey map for the species Drosophila melanogaster

geneticDistances-methods: Accessors for slot geneticDistances

getInterList-methods: returns a list of interpolation methods.

Homo_sapiens: The marey map for the species Homo sapiens (female, male and...

interpolate-methods: interpolate

Interpolation-class: Class "Interpolation"

interpolation-methods: set or returns an interpolation.

InterpolationParam-class: Class "InterpolationParam"

InterpolationParam-methods: Methods for Function InterpolationParam in Package 'MareyMap'

interpolations-methods: accessors for slot interpolations

MapCollection-class: Class "MapCollection"

MapCollection-methods: Constructor for class MapCollection

mapName-methods: accessors for the slot mapName

mapNames-methods: mapNames

MareyMap-class: Class "MareyMap"

MareyMap-methods: Constructor for object of the class MareyMap.

markerNames-methods: Accessors for the class markerNames.

markerValidity-methods: accessors for slot markerValidity

MMLoess-class: Class "MMLoess". Interpolation method plug-in for MareyMap

MMSlidingWindow-class: Class "MMSlidingWindow" Interpolation method plug-in for...

MMSpline3-class: Class "MMSpline3" Interpolation using cubic splines

name-Methods: Accessor for slot name.

paramDefault-methods: Accessors for slot paramDefault

paramDesc-methods: Accessors for the slot paramDesc

paramFun-methods: accessors for the slot paramFun

paramMax-methods: Accessors for the slot paramMax.

paramMin-methods: Accessors for slot paramMin.

paramName-methods: Accessors for the slot paramName.

paramType-methods: Accessors for the slot paramType.

paramValues-methods: Accessor for the slot paramValues.

persistent-methods: Accessors for the slot persistent.

physicalPositions-methods: Accessors for the slot physicalPositions

plotMarkers-methods: plotMarkers

plotModel-methods: plotModel

plotModels-methods: plotModels

plotRate-methods: plotRate

plotRates-methods: plotRates

query-methods: Methods for Function query

rates-methods: Accessors for the slot rates

registerInterpolationMethod-methods: registerInterpolationMethods

removeMarker-methods: removeMarker

SpeciesMaps-class: Class "MapSet"

SpeciesMaps-methods: Constructor for the class MapSet.

speciesName-methods: Accessors for the slot setName.

speciesNames-methods: setNames

startMareyMapGUI-methods: MareyMapGUI launcher

textFile-methods: textFile

userParam-methods: userParam

validPositions-methods: validPositions

visible-methods: Accessors for the slot visible

Files in this package

MareyMap
MareyMap/COPYING
MareyMap/inst
MareyMap/inst/stock_delete.gif
MareyMap/inst/gnome-settings.gif
MareyMap/inst/gtk-add.gif
MareyMap/inst/license.txt
MareyMap/inst/stock_color.gif
MareyMap/inst/stock_save.gif
MareyMap/inst/stock_help-agent.gif
MareyMap/inst/about.txt
MareyMap/inst/stock_show-all.gif
MareyMap/inst/doc
MareyMap/inst/doc/vignette.Rnw
MareyMap/inst/doc/vignette.pdf
MareyMap/NAMESPACE
MareyMap/data
MareyMap/data/Arabidopsis_thaliana.rda
MareyMap/data/Homo_sapiens_female.rda
MareyMap/data/Caenorhabditis_elegans.rda
MareyMap/data/Homo_sapiens_male.rda
MareyMap/data/Homo_sapiens_mean.rda
MareyMap/data/Drosophila_melanogaster.rda
MareyMap/R
MareyMap/R/AllClasses.R MareyMap/R/PlotArea.R MareyMap/R/Registry.R MareyMap/R/MarkerInfo.R MareyMap/R/MareyMap.Methods.R MareyMap/R/MapSet.Methods.R MareyMap/R/mmspline3.R MareyMap/R/MenuBar.R MareyMap/R/startMareyMapGUI.R MareyMap/R/InterpolationParam.Methods.R MareyMap/R/mmloess.R MareyMap/R/InterpolationList.R MareyMap/R/mmslidingwindow.R MareyMap/R/Interpolation.Methods.R MareyMap/R/AllGeneric.R MareyMap/R/MapCollection.Methods.R MareyMap/R/LocalRateQuery.R MareyMap/R/MapList.R
MareyMap/vignettes
MareyMap/vignettes/vignette.Rnw
MareyMap/vignettes/vignette-concordance.tex
MareyMap/vignettes/severalqueries.png
MareyMap/vignettes/stock_save.png
MareyMap/vignettes/listmethods.png
MareyMap/vignettes/loessmethod.png
MareyMap/vignettes/gnome-settings.png
MareyMap/vignettes/opendata.png
MareyMap/vignettes/test_query.txt
MareyMap/vignettes/slidingwindowmethod.png
MareyMap/vignettes/gtk-add.png
MareyMap/vignettes/splinemethod.png
MareyMap/vignettes/stock_delete.png
MareyMap/vignettes/start.png
MareyMap/vignettes/interactivequery.png
MareyMap/vignettes/stock_show-all.png
MareyMap/MD5
MareyMap/build
MareyMap/build/vignette.rds
MareyMap/DESCRIPTION
MareyMap/man
MareyMap/man/registerInterpolationMethod-methods.Rd MareyMap/man/paramDefault-methods.Rd MareyMap/man/paramMax-methods.Rd MareyMap/man/rates-methods.Rd MareyMap/man/paramName-methods.Rd MareyMap/man/interpolation-methods.Rd MareyMap/man/plotModel-methods.Rd MareyMap/man/mapName-methods.Rd MareyMap/man/persistent-methods.Rd MareyMap/man/InterpolationParam-class.Rd MareyMap/man/plotRates-methods.Rd MareyMap/man/MareyMap-class.Rd MareyMap/man/plotMarkers-methods.Rd MareyMap/man/createOrder-methods.Rd MareyMap/man/Homo_sapiens.Rd MareyMap/man/Drosophila_melanogaster.Rd MareyMap/man/argList-methods.Rd MareyMap/man/plotModels-methods.Rd MareyMap/man/speciesName-methods.Rd MareyMap/man/MapCollection-class.Rd MareyMap/man/speciesNames-methods.Rd MareyMap/man/markerValidity-methods.Rd MareyMap/man/mapNames-methods.Rd MareyMap/man/SpeciesMaps-methods.Rd MareyMap/man/Interpolation-class.Rd MareyMap/man/validPositions-methods.Rd MareyMap/man/interpolate-methods.Rd MareyMap/man/physicalPositions-methods.Rd MareyMap/man/paramDesc-methods.Rd MareyMap/man/InterpolationParam-methods.Rd MareyMap/man/Arabidopsis_thaliana.Rd MareyMap/man/getInterList-methods.Rd MareyMap/man/paramMin-methods.Rd MareyMap/man/MMSlidingWindow-class.Rd MareyMap/man/SpeciesMaps-class.Rd MareyMap/man/query-methods.Rd MareyMap/man/Caenorhabditis_elegans.Rd MareyMap/man/startMareyMapGUI-methods.Rd MareyMap/man/markerNames-methods.Rd MareyMap/man/paramValues-methods.Rd MareyMap/man/visible-methods.Rd MareyMap/man/MareyMap-methods.Rd MareyMap/man/interpolations-methods.Rd MareyMap/man/userParam-methods.Rd MareyMap/man/MapCollection-methods.Rd MareyMap/man/name-Methods.Rd MareyMap/man/color-methods.Rd MareyMap/man/plotRate-methods.Rd MareyMap/man/textFile-methods.Rd MareyMap/man/geneticDistances-methods.Rd MareyMap/man/paramType-methods.Rd MareyMap/man/removeMarker-methods.Rd MareyMap/man/MMSpline3-class.Rd MareyMap/man/MMLoess-class.Rd MareyMap/man/paramFun-methods.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.